Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3555 and GFF3556 are separated by 54 nucleotides GFF3556 and GFF3557 are separated by 1 nucleotides
GFF3555 - hypothetical protein, at 410,807 to 412,015
GFF3555
GFF3556 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 412,070 to 412,783
GFF3556
GFF3557 - Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA, at 412,785 to 413,555
GFF3557
Position (kb) 412
413 Strain fitness (log2 ratio) -2
-1
0
1 at 411.078 kb on + strand, within GFF3555 at 411.078 kb on + strand, within GFF3555 at 411.078 kb on + strand, within GFF3555 at 411.079 kb on - strand, within GFF3555 at 411.079 kb on - strand, within GFF3555 at 411.096 kb on + strand, within GFF3555 at 411.097 kb on - strand, within GFF3555 at 411.196 kb on + strand, within GFF3555 at 411.300 kb on + strand, within GFF3555 at 411.300 kb on + strand, within GFF3555 at 411.301 kb on - strand, within GFF3555 at 411.505 kb on - strand, within GFF3555 at 411.589 kb on - strand, within GFF3555 at 411.589 kb on - strand, within GFF3555 at 411.753 kb on + strand, within GFF3555 at 411.753 kb on + strand, within GFF3555 at 411.903 kb on + strand at 411.903 kb on + strand at 411.998 kb on + strand at 411.999 kb on - strand at 411.999 kb on - strand at 412.126 kb on - strand at 412.161 kb on + strand, within GFF3556 at 412.161 kb on + strand, within GFF3556 at 412.161 kb on + strand, within GFF3556 at 412.162 kb on - strand, within GFF3556 at 412.162 kb on - strand, within GFF3556 at 412.584 kb on + strand, within GFF3556 at 412.585 kb on - strand, within GFF3556 at 412.731 kb on + strand at 412.732 kb on - strand at 412.732 kb on - strand at 412.808 kb on + strand at 412.809 kb on - strand at 412.810 kb on + strand at 412.810 kb on + strand at 412.810 kb on + strand at 412.811 kb on - strand at 412.811 kb on - strand at 412.811 kb on - strand at 412.811 kb on - strand at 412.811 kb on - strand at 412.849 kb on + strand at 413.119 kb on + strand, within GFF3557 at 413.447 kb on + strand, within GFF3557 at 413.530 kb on + strand at 413.530 kb on + strand at 413.531 kb on - strand at 413.531 kb on - strand at 413.531 kb on - strand at 413.561 kb on + strand at 413.666 kb on + strand at 413.666 kb on + strand at 413.666 kb on + strand at 413.666 kb on + strand at 413.667 kb on - strand at 413.667 kb on - strand at 413.690 kb on + strand at 413.690 kb on + strand at 413.690 kb on + strand at 413.714 kb on + strand at 413.714 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 411,078 + GFF3555 0.22 +0.0 411,078 + GFF3555 0.22 -0.7 411,078 + GFF3555 0.22 -1.5 411,079 - GFF3555 0.22 +0.2 411,079 - GFF3555 0.22 -0.1 411,096 + GFF3555 0.24 -0.4 411,097 - GFF3555 0.24 -0.5 411,196 + GFF3555 0.32 +0.4 411,300 + GFF3555 0.41 -0.7 411,300 + GFF3555 0.41 +0.3 411,301 - GFF3555 0.41 -0.8 411,505 - GFF3555 0.58 -0.8 411,589 - GFF3555 0.65 -0.4 411,589 - GFF3555 0.65 -0.1 411,753 + GFF3555 0.78 +0.3 411,753 + GFF3555 0.78 -1.4 411,903 + -0.2 411,903 + -0.7 411,998 + +0.1 411,999 - +0.3 411,999 - +0.1 412,126 - -0.4 412,161 + GFF3556 0.13 +0.7 412,161 + GFF3556 0.13 -0.9 412,161 + GFF3556 0.13 -0.6 412,162 - GFF3556 0.13 +0.1 412,162 - GFF3556 0.13 -1.2 412,584 + GFF3556 0.72 -0.7 412,585 - GFF3556 0.72 +0.3 412,731 + -0.4 412,732 - -1.6 412,732 - -0.1 412,808 + -0.0 412,809 - -0.2 412,810 + -1.1 412,810 + -1.7 412,810 + -1.8 412,811 - -0.2 412,811 - +0.1 412,811 - -0.8 412,811 - +0.1 412,811 - -0.2 412,849 + -0.3 413,119 + GFF3557 0.43 -0.7 413,447 + GFF3557 0.86 -0.8 413,530 + -1.1 413,530 + +0.5 413,531 - -0.2 413,531 - +0.1 413,531 - -0.2 413,561 + +0.7 413,666 + +0.3 413,666 + +1.1 413,666 + +0.4 413,666 + -0.2 413,667 - -0.6 413,667 - -0.6 413,690 + +0.9 413,690 + +0.4 413,690 + +0.4 413,714 + +0.4 413,714 + +0.4
Or see this region's nucleotide sequence