Strain Fitness in Xanthobacter sp. DMC5 around GFF3553

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3552 and GFF3553 are separated by 96 nucleotidesGFF3553 and GFF3554 are separated by 27 nucleotides GFF3552 - Inner membrane protein YdcO, at 407,546 to 408,691 GFF3552 GFF3553 - hypothetical protein, at 408,788 to 409,777 GFF3553 GFF3554 - High-affinity branched-chain amino acid transport system permease protein LivH, at 409,805 to 410,686 GFF3554 Position (kb) 408 409 410Strain fitness (log2 ratio) -1 0 1at 408.242 kb on + strand, within GFF3552at 408.242 kb on + strand, within GFF3552at 408.242 kb on + strand, within GFF3552at 408.243 kb on - strand, within GFF3552at 408.407 kb on + strand, within GFF3552at 408.407 kb on + strand, within GFF3552at 408.407 kb on + strand, within GFF3552at 408.407 kb on + strand, within GFF3552at 408.407 kb on + strand, within GFF3552at 408.408 kb on - strand, within GFF3552at 408.419 kb on + strand, within GFF3552at 408.419 kb on + strand, within GFF3552at 408.419 kb on + strand, within GFF3552at 408.420 kb on - strand, within GFF3552at 408.420 kb on - strand, within GFF3552at 408.512 kb on - strand, within GFF3552at 408.790 kb on - strandat 408.790 kb on - strandat 408.927 kb on + strand, within GFF3553at 408.927 kb on + strand, within GFF3553at 408.927 kb on + strand, within GFF3553at 408.928 kb on - strand, within GFF3553at 408.928 kb on - strand, within GFF3553at 409.128 kb on + strand, within GFF3553at 409.129 kb on - strand, within GFF3553at 409.221 kb on + strand, within GFF3553at 409.221 kb on + strand, within GFF3553at 409.222 kb on - strand, within GFF3553at 409.222 kb on - strand, within GFF3553at 409.222 kb on - strand, within GFF3553at 409.266 kb on + strand, within GFF3553at 409.266 kb on + strand, within GFF3553at 409.367 kb on + strand, within GFF3553at 409.539 kb on + strand, within GFF3553at 409.539 kb on + strand, within GFF3553at 409.540 kb on - strand, within GFF3553at 409.540 kb on - strand, within GFF3553at 409.540 kb on - strand, within GFF3553at 409.590 kb on + strand, within GFF3553at 409.591 kb on - strand, within GFF3553at 409.642 kb on - strand, within GFF3553at 409.660 kb on - strand, within GFF3553at 409.660 kb on - strand, within GFF3553at 409.893 kb on + strandat 409.894 kb on - strand, within GFF3554at 409.895 kb on + strand, within GFF3554at 410.034 kb on + strand, within GFF3554at 410.035 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.248 kb on - strand, within GFF3554at 410.248 kb on - strand, within GFF3554at 410.301 kb on + strand, within GFF3554at 410.302 kb on - strand, within GFF3554at 410.302 kb on - strand, within GFF3554at 410.302 kb on - strand, within GFF3554at 410.322 kb on + strand, within GFF3554at 410.383 kb on - strand, within GFF3554at 410.383 kb on - strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.402 kb on + strand, within GFF3554at 410.497 kb on - strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.536 kb on - strand, within GFF3554at 410.610 kb on + strandat 410.610 kb on + strandat 410.610 kb on + strandat 410.610 kb on + strandat 410.610 kb on + strandat 410.611 kb on - strandat 410.623 kb on + strandat 410.749 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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408,242 + GFF3552 0.61 +1.4
408,242 + GFF3552 0.61 -0.2
408,242 + GFF3552 0.61 +0.3
408,243 - GFF3552 0.61 +0.6
408,407 + GFF3552 0.75 -0.8
408,407 + GFF3552 0.75 -0.3
408,407 + GFF3552 0.75 -0.3
408,407 + GFF3552 0.75 -0.3
408,407 + GFF3552 0.75 +0.2
408,408 - GFF3552 0.75 +1.4
408,419 + GFF3552 0.76 -0.9
408,419 + GFF3552 0.76 -0.1
408,419 + GFF3552 0.76 +0.0
408,420 - GFF3552 0.76 +0.1
408,420 - GFF3552 0.76 +1.1
408,512 - GFF3552 0.84 -0.1
408,790 - +0.1
408,790 - -0.3
408,927 + GFF3553 0.14 -1.0
408,927 + GFF3553 0.14 +0.1
408,927 + GFF3553 0.14 -1.3
408,928 - GFF3553 0.14 +0.3
408,928 - GFF3553 0.14 -0.2
409,128 + GFF3553 0.34 -0.1
409,129 - GFF3553 0.34 -1.1
409,221 + GFF3553 0.44 +0.9
409,221 + GFF3553 0.44 -0.9
409,222 - GFF3553 0.44 -0.8
409,222 - GFF3553 0.44 -1.4
409,222 - GFF3553 0.44 -0.3
409,266 + GFF3553 0.48 +0.1
409,266 + GFF3553 0.48 -1.1
409,367 + GFF3553 0.58 -0.1
409,539 + GFF3553 0.76 -0.3
409,539 + GFF3553 0.76 +0.9
409,540 - GFF3553 0.76 -0.1
409,540 - GFF3553 0.76 -0.2
409,540 - GFF3553 0.76 -0.6
409,590 + GFF3553 0.81 -0.9
409,591 - GFF3553 0.81 -0.9
409,642 - GFF3553 0.86 -1.2
409,660 - GFF3553 0.88 -1.1
409,660 - GFF3553 0.88 -0.7
409,893 + -0.3
409,894 - GFF3554 0.10 -0.5
409,895 + GFF3554 0.10 -1.0
410,034 + GFF3554 0.26 +0.7
410,035 - GFF3554 0.26 -0.6
410,089 - GFF3554 0.32 -0.3
410,089 - GFF3554 0.32 -1.2
410,089 - GFF3554 0.32 -0.4
410,089 - GFF3554 0.32 -0.4
410,166 + GFF3554 0.41 +0.3
410,166 + GFF3554 0.41 -0.4
410,166 + GFF3554 0.41 -0.6
410,166 + GFF3554 0.41 +0.6
410,166 + GFF3554 0.41 -0.7
410,248 - GFF3554 0.50 -1.2
410,248 - GFF3554 0.50 -1.1
410,301 + GFF3554 0.56 -0.4
410,302 - GFF3554 0.56 -0.4
410,302 - GFF3554 0.56 +0.3
410,302 - GFF3554 0.56 -0.4
410,322 + GFF3554 0.59 -0.3
410,383 - GFF3554 0.66 +0.1
410,383 - GFF3554 0.66 -0.6
410,400 + GFF3554 0.67 -0.8
410,400 + GFF3554 0.67 +0.0
410,400 + GFF3554 0.67 -0.1
410,400 + GFF3554 0.67 +0.2
410,400 + GFF3554 0.67 -0.6
410,400 + GFF3554 0.67 -0.6
410,400 + GFF3554 0.67 -1.0
410,400 + GFF3554 0.67 -0.4
410,400 + GFF3554 0.67 -0.4
410,400 + GFF3554 0.67 -0.3
410,400 + GFF3554 0.67 -0.4
410,401 - GFF3554 0.68 -0.8
410,401 - GFF3554 0.68 -0.9
410,401 - GFF3554 0.68 -0.2
410,401 - GFF3554 0.68 -0.5
410,401 - GFF3554 0.68 +0.6
410,402 + GFF3554 0.68 +0.1
410,497 - GFF3554 0.78 -0.3
410,535 + GFF3554 0.83 -0.8
410,535 + GFF3554 0.83 -0.9
410,535 + GFF3554 0.83 -0.7
410,535 + GFF3554 0.83 -0.8
410,536 - GFF3554 0.83 -0.8
410,610 + -0.2
410,610 + -1.2
410,610 + -0.9
410,610 + -1.3
410,610 + -0.5
410,611 - -0.4
410,623 + -1.3
410,749 - -0.1

Or see this region's nucleotide sequence