Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3524 and GFF3525 are separated by 100 nucleotides GFF3525 and GFF3526 are separated by 69 nucleotides GFF3526 and GFF3527 are separated by 247 nucleotides
GFF3524 - hypothetical protein, at 375,005 to 375,931
GFF3524
GFF3525 - hypothetical protein, at 376,032 to 376,778
GFF3525
GFF3526 - NAD-dependent malic enzyme, at 376,848 to 379,127
GFF3526
GFF3527 - hypothetical protein, at 379,375 to 381,414
GFF3527
Position (kb) 376
377
378
379
380 Strain fitness (log2 ratio) -1
0
1 at 375.944 kb on - strand at 375.945 kb on + strand at 375.945 kb on + strand at 375.946 kb on - strand at 376.359 kb on + strand, within GFF3525 at 376.360 kb on - strand, within GFF3525 at 376.488 kb on + strand, within GFF3525 at 376.925 kb on + strand at 377.579 kb on - strand, within GFF3526 at 377.779 kb on + strand, within GFF3526 at 377.779 kb on + strand, within GFF3526 at 377.873 kb on - strand, within GFF3526 at 378.020 kb on - strand, within GFF3526 at 378.020 kb on - strand, within GFF3526 at 378.397 kb on + strand, within GFF3526 at 378.397 kb on + strand, within GFF3526 at 378.398 kb on - strand, within GFF3526 at 378.440 kb on - strand, within GFF3526 at 379.197 kb on - strand at 379.197 kb on - strand at 379.197 kb on - strand at 379.221 kb on - strand at 379.221 kb on - strand at 379.226 kb on - strand at 379.226 kb on - strand at 379.345 kb on - strand at 379.769 kb on - strand, within GFF3527 at 379.769 kb on - strand, within GFF3527 at 379.769 kb on - strand, within GFF3527 at 379.798 kb on + strand, within GFF3527 at 379.798 kb on + strand, within GFF3527 at 379.799 kb on - strand, within GFF3527 at 379.799 kb on - strand, within GFF3527 at 379.963 kb on + strand, within GFF3527 at 379.963 kb on + strand, within GFF3527 at 379.963 kb on + strand, within GFF3527 at 379.964 kb on - strand, within GFF3527 at 379.964 kb on - strand, within GFF3527 at 380.038 kb on + strand, within GFF3527 at 380.038 kb on + strand, within GFF3527 at 380.038 kb on + strand, within GFF3527 at 380.039 kb on - strand, within GFF3527 at 380.039 kb on - strand, within GFF3527
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 375,944 - -0.2 375,945 + -0.6 375,945 + +0.2 375,946 - -1.2 376,359 + GFF3525 0.44 +0.8 376,360 - GFF3525 0.44 -0.1 376,488 + GFF3525 0.61 +0.3 376,925 + +0.1 377,579 - GFF3526 0.32 +0.1 377,779 + GFF3526 0.41 -0.4 377,779 + GFF3526 0.41 -0.1 377,873 - GFF3526 0.45 +0.1 378,020 - GFF3526 0.51 -0.4 378,020 - GFF3526 0.51 -0.1 378,397 + GFF3526 0.68 +0.1 378,397 + GFF3526 0.68 -1.0 378,398 - GFF3526 0.68 -0.2 378,440 - GFF3526 0.70 -1.4 379,197 - -0.4 379,197 - +0.1 379,197 - -0.2 379,221 - -1.6 379,221 - +0.7 379,226 - -0.6 379,226 - +0.2 379,345 - -0.5 379,769 - GFF3527 0.19 -0.1 379,769 - GFF3527 0.19 +0.5 379,769 - GFF3527 0.19 +0.1 379,798 + GFF3527 0.21 -0.4 379,798 + GFF3527 0.21 +0.3 379,799 - GFF3527 0.21 -0.6 379,799 - GFF3527 0.21 -0.2 379,963 + GFF3527 0.29 -0.3 379,963 + GFF3527 0.29 -1.3 379,963 + GFF3527 0.29 +0.4 379,964 - GFF3527 0.29 +0.1 379,964 - GFF3527 0.29 -0.2 380,038 + GFF3527 0.33 -0.4 380,038 + GFF3527 0.33 -0.4 380,038 + GFF3527 0.33 +0.0 380,039 - GFF3527 0.33 -0.1 380,039 - GFF3527 0.33 +0.1
Or see this region's nucleotide sequence