Strain Fitness in Xanthobacter sp. DMC5 around GFF3522

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3521 and GFF3522 overlap by 44 nucleotidesGFF3522 and GFF3523 are separated by 290 nucleotides GFF3521 - hypothetical protein, at 371,769 to 373,088 GFF3521 GFF3522 - hypothetical protein, at 373,045 to 373,638 GFF3522 GFF3523 - hypothetical protein, at 373,929 to 374,864 GFF3523 Position (kb) 373 374Strain fitness (log2 ratio) -1 0 1at 372.404 kb on + strand, within GFF3521at 373.502 kb on + strand, within GFF3522at 373.972 kb on + strandat 373.973 kb on - strandat 373.997 kb on - strandat 374.053 kb on + strand, within GFF3523at 374.053 kb on + strand, within GFF3523at 374.053 kb on + strand, within GFF3523at 374.054 kb on - strand, within GFF3523at 374.230 kb on + strand, within GFF3523

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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372,404 + GFF3521 0.48 -1.4
373,502 + GFF3522 0.77 -0.0
373,972 + -0.6
373,973 - +0.1
373,997 - +0.6
374,053 + GFF3523 0.13 +0.5
374,053 + GFF3523 0.13 -0.2
374,053 + GFF3523 0.13 -0.4
374,054 - GFF3523 0.13 -0.4
374,230 + GFF3523 0.32 +0.3

Or see this region's nucleotide sequence