Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3513 and GFF3514 are separated by 165 nucleotides GFF3514 and GFF3515 are separated by 25 nucleotides GFF3515 and GFF3516 are separated by 3 nucleotides GFF3516 and GFF3517 are separated by 27 nucleotides
GFF3513 - HTH-type transcriptional activator RhaS, at 365,597 to 366,493
GFF3513
GFF3514 - hypothetical protein, at 366,659 to 367,945
GFF3514
GFF3515 - hypothetical protein, at 367,971 to 368,468
GFF3515
GFF3516 - hypothetical protein, at 368,472 to 368,678
GFF3516
GFF3517 - hypothetical protein, at 368,706 to 368,894
GFF3517
Position (kb) 366
367
368 Strain fitness (log2 ratio) -1
0
1 at 365.771 kb on + strand, within GFF3513 at 365.771 kb on + strand, within GFF3513 at 365.772 kb on - strand, within GFF3513 at 365.804 kb on + strand, within GFF3513 at 365.804 kb on + strand, within GFF3513 at 365.861 kb on + strand, within GFF3513 at 365.862 kb on - strand, within GFF3513 at 366.090 kb on - strand, within GFF3513 at 366.090 kb on - strand, within GFF3513 at 366.090 kb on - strand, within GFF3513 at 366.732 kb on + strand at 366.733 kb on - strand at 366.733 kb on - strand at 366.733 kb on - strand at 366.744 kb on + strand at 366.744 kb on + strand at 366.745 kb on - strand at 366.760 kb on - strand at 366.804 kb on + strand, within GFF3514 at 366.804 kb on + strand, within GFF3514 at 366.804 kb on + strand, within GFF3514 at 366.805 kb on - strand, within GFF3514 at 366.805 kb on - strand, within GFF3514 at 366.936 kb on + strand, within GFF3514 at 366.937 kb on - strand, within GFF3514 at 366.937 kb on - strand, within GFF3514 at 366.937 kb on - strand, within GFF3514 at 367.101 kb on + strand, within GFF3514 at 367.101 kb on + strand, within GFF3514 at 367.101 kb on + strand, within GFF3514 at 367.101 kb on + strand, within GFF3514 at 367.101 kb on + strand, within GFF3514 at 367.102 kb on - strand, within GFF3514 at 367.144 kb on + strand, within GFF3514 at 367.144 kb on + strand, within GFF3514 at 367.144 kb on + strand, within GFF3514 at 367.147 kb on - strand, within GFF3514 at 367.303 kb on - strand, within GFF3514 at 367.303 kb on - strand, within GFF3514 at 367.303 kb on - strand, within GFF3514 at 367.419 kb on + strand, within GFF3514 at 367.420 kb on - strand, within GFF3514 at 367.509 kb on + strand, within GFF3514 at 367.521 kb on + strand, within GFF3514 at 367.602 kb on + strand, within GFF3514 at 367.602 kb on + strand, within GFF3514 at 367.602 kb on + strand, within GFF3514 at 367.602 kb on + strand, within GFF3514 at 367.603 kb on - strand, within GFF3514 at 367.603 kb on - strand, within GFF3514 at 367.606 kb on + strand, within GFF3514 at 367.812 kb on + strand, within GFF3514 at 367.812 kb on + strand, within GFF3514 at 367.812 kb on + strand, within GFF3514 at 367.813 kb on - strand, within GFF3514 at 367.956 kb on + strand at 368.317 kb on + strand, within GFF3515 at 368.318 kb on - strand, within GFF3515 at 368.318 kb on - strand, within GFF3515 at 368.318 kb on - strand, within GFF3515 at 368.324 kb on + strand, within GFF3515 at 368.324 kb on + strand, within GFF3515 at 368.324 kb on + strand, within GFF3515 at 368.324 kb on + strand, within GFF3515 at 368.324 kb on + strand, within GFF3515 at 368.324 kb on + strand, within GFF3515 at 368.325 kb on - strand, within GFF3515 at 368.325 kb on - strand, within GFF3515 at 368.422 kb on + strand at 368.422 kb on + strand at 368.423 kb on - strand at 368.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 365,771 + GFF3513 0.19 -0.5 365,771 + GFF3513 0.19 -0.7 365,772 - GFF3513 0.20 -0.2 365,804 + GFF3513 0.23 -0.7 365,804 + GFF3513 0.23 +0.6 365,861 + GFF3513 0.29 -1.2 365,862 - GFF3513 0.30 +0.6 366,090 - GFF3513 0.55 +0.0 366,090 - GFF3513 0.55 +0.1 366,090 - GFF3513 0.55 -0.1 366,732 + +0.1 366,733 - -0.5 366,733 - +1.0 366,733 - +0.6 366,744 + -0.2 366,744 + +0.7 366,745 - -1.1 366,760 - +0.0 366,804 + GFF3514 0.11 +0.1 366,804 + GFF3514 0.11 +0.8 366,804 + GFF3514 0.11 +0.2 366,805 - GFF3514 0.11 -0.6 366,805 - GFF3514 0.11 -0.6 366,936 + GFF3514 0.22 +0.5 366,937 - GFF3514 0.22 +0.6 366,937 - GFF3514 0.22 -0.6 366,937 - GFF3514 0.22 +0.0 367,101 + GFF3514 0.34 -0.2 367,101 + GFF3514 0.34 +0.7 367,101 + GFF3514 0.34 +0.2 367,101 + GFF3514 0.34 +0.1 367,101 + GFF3514 0.34 -0.0 367,102 - GFF3514 0.34 +0.1 367,144 + GFF3514 0.38 +0.4 367,144 + GFF3514 0.38 -0.1 367,144 + GFF3514 0.38 +0.5 367,147 - GFF3514 0.38 -0.2 367,303 - GFF3514 0.50 +1.7 367,303 - GFF3514 0.50 -0.1 367,303 - GFF3514 0.50 +0.0 367,419 + GFF3514 0.59 -0.4 367,420 - GFF3514 0.59 +1.1 367,509 + GFF3514 0.66 +0.1 367,521 + GFF3514 0.67 -0.6 367,602 + GFF3514 0.73 +0.8 367,602 + GFF3514 0.73 +0.2 367,602 + GFF3514 0.73 +0.4 367,602 + GFF3514 0.73 -0.6 367,603 - GFF3514 0.73 -0.4 367,603 - GFF3514 0.73 -0.2 367,606 + GFF3514 0.74 +0.8 367,812 + GFF3514 0.90 -0.1 367,812 + GFF3514 0.90 +0.1 367,812 + GFF3514 0.90 +1.3 367,813 - GFF3514 0.90 -0.5 367,956 + -0.2 368,317 + GFF3515 0.69 +0.4 368,318 - GFF3515 0.70 -0.9 368,318 - GFF3515 0.70 +0.3 368,318 - GFF3515 0.70 +0.5 368,324 + GFF3515 0.71 -0.3 368,324 + GFF3515 0.71 -0.3 368,324 + GFF3515 0.71 +0.1 368,324 + GFF3515 0.71 -0.6 368,324 + GFF3515 0.71 +0.0 368,324 + GFF3515 0.71 -0.2 368,325 - GFF3515 0.71 +0.0 368,325 - GFF3515 0.71 +0.4 368,422 + -0.3 368,422 + -0.7 368,423 - +0.9 368,889 - +0.3
Or see this region's nucleotide sequence