Strain Fitness in Xanthobacter sp. DMC5 around GFF351

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF350 and GFF351 are separated by 13 nucleotidesGFF351 and GFF352 are separated by 6 nucleotides GFF350 - hypothetical protein, at 357,905 to 359,296 GFF350 GFF351 - hypothetical protein, at 359,310 to 360,335 GFF351 GFF352 - hypothetical protein, at 360,342 to 361,520 GFF352 Position (kb) 359 360 361Strain fitness (log2 ratio) -2 -1 0 1at 358.340 kb on + strand, within GFF350at 358.340 kb on + strand, within GFF350at 358.409 kb on + strand, within GFF350at 358.410 kb on - strand, within GFF350at 358.410 kb on - strand, within GFF350at 358.427 kb on + strand, within GFF350at 358.427 kb on + strand, within GFF350at 358.428 kb on - strand, within GFF350at 358.428 kb on - strand, within GFF350at 358.428 kb on - strand, within GFF350at 358.541 kb on + strand, within GFF350at 358.542 kb on - strand, within GFF350at 358.592 kb on + strand, within GFF350at 358.593 kb on - strand, within GFF350at 358.593 kb on - strand, within GFF350at 358.593 kb on - strand, within GFF350at 358.595 kb on + strand, within GFF350at 358.706 kb on + strand, within GFF350at 358.707 kb on - strand, within GFF350at 358.707 kb on - strand, within GFF350at 358.746 kb on - strand, within GFF350at 358.758 kb on - strand, within GFF350at 358.758 kb on - strand, within GFF350at 358.758 kb on - strand, within GFF350at 358.758 kb on - strand, within GFF350at 358.778 kb on + strand, within GFF350at 358.778 kb on + strand, within GFF350at 358.778 kb on + strand, within GFF350at 358.779 kb on - strand, within GFF350at 358.839 kb on - strand, within GFF350at 358.839 kb on - strand, within GFF350at 358.857 kb on - strand, within GFF350at 358.857 kb on - strand, within GFF350at 358.955 kb on + strand, within GFF350at 358.956 kb on - strand, within GFF350at 358.956 kb on - strand, within GFF350at 358.986 kb on - strand, within GFF350at 358.986 kb on - strand, within GFF350at 358.986 kb on - strand, within GFF350at 358.991 kb on + strand, within GFF350at 358.992 kb on - strand, within GFF350at 358.997 kb on - strand, within GFF350at 358.997 kb on - strand, within GFF350at 359.040 kb on + strand, within GFF350at 359.040 kb on + strand, within GFF350at 359.040 kb on + strand, within GFF350at 359.041 kb on - strand, within GFF350at 359.091 kb on - strand, within GFF350at 359.096 kb on + strand, within GFF350at 359.096 kb on + strand, within GFF350at 359.097 kb on - strand, within GFF350at 359.216 kb on + strandat 359.216 kb on + strandat 359.216 kb on + strandat 359.216 kb on + strandat 359.216 kb on + strandat 359.217 kb on - strandat 359.217 kb on - strandat 359.246 kb on + strandat 359.246 kb on + strandat 359.480 kb on + strand, within GFF351at 359.598 kb on + strand, within GFF351at 360.165 kb on + strand, within GFF351at 360.165 kb on + strand, within GFF351at 360.166 kb on - strand, within GFF351at 360.166 kb on - strand, within GFF351at 360.167 kb on + strand, within GFF351at 360.167 kb on + strand, within GFF351at 360.167 kb on + strand, within GFF351at 360.168 kb on - strand, within GFF351at 360.168 kb on - strand, within GFF351at 360.343 kb on + strandat 360.344 kb on - strandat 360.826 kb on + strand, within GFF352at 360.826 kb on + strand, within GFF352at 360.826 kb on + strand, within GFF352at 360.827 kb on - strand, within GFF352at 360.916 kb on + strand, within GFF352at 360.917 kb on - strand, within GFF352at 361.111 kb on + strand, within GFF352at 361.111 kb on + strand, within GFF352at 361.111 kb on + strand, within GFF352at 361.174 kb on + strand, within GFF352at 361.175 kb on - strand, within GFF352

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
358,340 + GFF350 0.31 -0.5
358,340 + GFF350 0.31 +0.1
358,409 + GFF350 0.36 -0.1
358,410 - GFF350 0.36 +0.8
358,410 - GFF350 0.36 +0.3
358,427 + GFF350 0.38 -0.3
358,427 + GFF350 0.38 -0.0
358,428 - GFF350 0.38 +0.2
358,428 - GFF350 0.38 +0.7
358,428 - GFF350 0.38 +0.3
358,541 + GFF350 0.46 -1.5
358,542 - GFF350 0.46 +0.1
358,592 + GFF350 0.49 +0.4
358,593 - GFF350 0.49 +0.5
358,593 - GFF350 0.49 -0.2
358,593 - GFF350 0.49 +0.2
358,595 + GFF350 0.50 +0.2
358,706 + GFF350 0.58 +0.4
358,707 - GFF350 0.58 +0.1
358,707 - GFF350 0.58 -0.1
358,746 - GFF350 0.60 -0.2
358,758 - GFF350 0.61 -0.5
358,758 - GFF350 0.61 +0.5
358,758 - GFF350 0.61 +0.6
358,758 - GFF350 0.61 +0.3
358,778 + GFF350 0.63 -1.4
358,778 + GFF350 0.63 -0.3
358,778 + GFF350 0.63 +0.2
358,779 - GFF350 0.63 -0.3
358,839 - GFF350 0.67 -0.8
358,839 - GFF350 0.67 -0.5
358,857 - GFF350 0.68 +0.4
358,857 - GFF350 0.68 -0.4
358,955 + GFF350 0.75 -0.3
358,956 - GFF350 0.76 +0.0
358,956 - GFF350 0.76 +0.3
358,986 - GFF350 0.78 +0.0
358,986 - GFF350 0.78 -2.4
358,986 - GFF350 0.78 +0.5
358,991 + GFF350 0.78 +0.7
358,992 - GFF350 0.78 +0.3
358,997 - GFF350 0.78 -0.6
358,997 - GFF350 0.78 +1.4
359,040 + GFF350 0.82 -0.5
359,040 + GFF350 0.82 -0.6
359,040 + GFF350 0.82 +0.3
359,041 - GFF350 0.82 -0.0
359,091 - GFF350 0.85 -0.7
359,096 + GFF350 0.86 -0.4
359,096 + GFF350 0.86 -0.0
359,097 - GFF350 0.86 -0.4
359,216 + -0.1
359,216 + -0.2
359,216 + +0.0
359,216 + +0.4
359,216 + +0.2
359,217 - -0.6
359,217 - +0.4
359,246 + -0.3
359,246 + -2.0
359,480 + GFF351 0.17 +0.3
359,598 + GFF351 0.28 +1.0
360,165 + GFF351 0.83 -0.2
360,165 + GFF351 0.83 +0.0
360,166 - GFF351 0.83 -0.2
360,166 - GFF351 0.83 +0.5
360,167 + GFF351 0.84 -1.3
360,167 + GFF351 0.84 +0.5
360,167 + GFF351 0.84 +0.0
360,168 - GFF351 0.84 -0.8
360,168 - GFF351 0.84 -0.1
360,343 + -0.3
360,344 - +0.5
360,826 + GFF352 0.41 -2.0
360,826 + GFF352 0.41 -0.8
360,826 + GFF352 0.41 +0.4
360,827 - GFF352 0.41 +0.0
360,916 + GFF352 0.49 +0.0
360,917 - GFF352 0.49 -0.0
361,111 + GFF352 0.65 +0.3
361,111 + GFF352 0.65 -0.3
361,111 + GFF352 0.65 -0.3
361,174 + GFF352 0.71 +0.9
361,175 - GFF352 0.71 -0.5

Or see this region's nucleotide sequence