Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF34 and GFF35 overlap by 4 nucleotides GFF35 and GFF36 are separated by 21 nucleotides
GFF34 - (2R)-3-sulfolactate dehydrogenase (NADP(+)), at 41,616 to 42,647
GFF34
GFF35 - Acetophenone carboxylase delta subunit, at 42,644 to 44,338
GFF35
GFF36 - Acetophenone carboxylase gamma subunit, at 44,360 to 46,405
GFF36
Position (kb) 42
43
44
45 Strain fitness (log2 ratio) -1
0
1
2 at 42.278 kb on - strand, within GFF34 at 42.466 kb on + strand, within GFF34 at 42.467 kb on - strand, within GFF34 at 42.679 kb on - strand at 42.679 kb on - strand at 42.679 kb on - strand at 42.685 kb on - strand at 42.826 kb on + strand, within GFF35 at 42.922 kb on - strand, within GFF35 at 43.072 kb on - strand, within GFF35 at 43.230 kb on + strand, within GFF35 at 43.230 kb on + strand, within GFF35 at 43.231 kb on - strand, within GFF35 at 43.236 kb on + strand, within GFF35 at 43.237 kb on - strand, within GFF35 at 43.237 kb on - strand, within GFF35 at 43.248 kb on + strand, within GFF35 at 43.248 kb on + strand, within GFF35 at 43.248 kb on + strand, within GFF35 at 43.251 kb on + strand, within GFF35 at 43.252 kb on - strand, within GFF35 at 43.458 kb on + strand, within GFF35 at 43.458 kb on + strand, within GFF35 at 43.459 kb on - strand, within GFF35 at 43.718 kb on - strand, within GFF35 at 43.722 kb on + strand, within GFF35 at 43.723 kb on - strand, within GFF35 at 43.723 kb on - strand, within GFF35 at 43.723 kb on - strand, within GFF35 at 43.821 kb on + strand, within GFF35 at 43.822 kb on - strand, within GFF35 at 43.822 kb on - strand, within GFF35 at 43.822 kb on - strand, within GFF35 at 43.923 kb on + strand, within GFF35 at 43.923 kb on + strand, within GFF35 at 43.926 kb on + strand, within GFF35 at 44.434 kb on - strand at 44.434 kb on - strand at 44.538 kb on + strand at 44.665 kb on - strand, within GFF36 at 44.778 kb on + strand, within GFF36 at 44.778 kb on + strand, within GFF36 at 44.921 kb on - strand, within GFF36
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 42,278 - GFF34 0.64 -0.3 42,466 + GFF34 0.82 -0.1 42,467 - GFF34 0.82 -0.7 42,679 - +0.5 42,679 - +0.0 42,679 - +0.3 42,685 - -0.1 42,826 + GFF35 0.11 +0.3 42,922 - GFF35 0.16 -0.5 43,072 - GFF35 0.25 +1.3 43,230 + GFF35 0.35 -0.1 43,230 + GFF35 0.35 +0.3 43,231 - GFF35 0.35 -1.2 43,236 + GFF35 0.35 -1.1 43,237 - GFF35 0.35 +0.7 43,237 - GFF35 0.35 -1.1 43,248 + GFF35 0.36 -0.3 43,248 + GFF35 0.36 +1.4 43,248 + GFF35 0.36 +0.7 43,251 + GFF35 0.36 -0.2 43,252 - GFF35 0.36 -0.2 43,458 + GFF35 0.48 +0.2 43,458 + GFF35 0.48 -0.7 43,459 - GFF35 0.48 +0.3 43,718 - GFF35 0.63 -0.4 43,722 + GFF35 0.64 -0.6 43,723 - GFF35 0.64 -0.8 43,723 - GFF35 0.64 -0.5 43,723 - GFF35 0.64 +0.5 43,821 + GFF35 0.69 +1.1 43,822 - GFF35 0.69 +0.1 43,822 - GFF35 0.69 -0.7 43,822 - GFF35 0.69 +0.7 43,923 + GFF35 0.75 +0.3 43,923 + GFF35 0.75 +0.3 43,926 + GFF35 0.76 -0.1 44,434 - -0.4 44,434 - +0.3 44,538 + +0.5 44,665 - GFF36 0.15 -0.3 44,778 + GFF36 0.20 -0.1 44,778 + GFF36 0.20 -0.8 44,921 - GFF36 0.27 +1.9
Or see this region's nucleotide sequence