Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3491 and GFF3492 are separated by 321 nucleotides GFF3492 and GFF3493 overlap by 4 nucleotides GFF3493 and GFF3494 are separated by 86 nucleotides
GFF3491 - Transcriptional regulatory protein PhoP, at 347,140 to 347,811
GFF3491
GFF3492 - hypothetical protein, at 348,133 to 348,453
GFF3492
GFF3493 - hypothetical protein, at 348,450 to 349,298
GFF3493
GFF3494 - hypothetical protein, at 349,385 to 350,788
GFF3494
Position (kb) 348
349
350 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 347.520 kb on - strand, within GFF3491 at 347.520 kb on - strand, within GFF3491 at 347.520 kb on - strand, within GFF3491 at 347.678 kb on + strand, within GFF3491 at 347.678 kb on + strand, within GFF3491 at 347.720 kb on + strand, within GFF3491 at 347.720 kb on + strand, within GFF3491 at 347.721 kb on - strand, within GFF3491 at 347.739 kb on - strand, within GFF3491 at 348.127 kb on + strand at 348.127 kb on + strand at 348.128 kb on - strand at 348.135 kb on - strand at 348.413 kb on + strand, within GFF3492 at 349.045 kb on + strand, within GFF3493 at 349.045 kb on + strand, within GFF3493 at 349.090 kb on + strand, within GFF3493 at 349.090 kb on + strand, within GFF3493 at 349.090 kb on + strand, within GFF3493 at 349.091 kb on - strand, within GFF3493 at 349.091 kb on - strand, within GFF3493 at 349.103 kb on - strand, within GFF3493 at 349.103 kb on - strand, within GFF3493 at 349.374 kb on + strand at 349.374 kb on + strand at 349.374 kb on + strand at 349.375 kb on - strand at 349.443 kb on + strand at 349.443 kb on + strand at 349.444 kb on - strand at 349.489 kb on - strand at 349.489 kb on - strand at 349.489 kb on - strand at 349.497 kb on + strand at 349.575 kb on + strand, within GFF3494 at 349.647 kb on + strand, within GFF3494 at 349.648 kb on - strand, within GFF3494 at 349.694 kb on - strand, within GFF3494 at 349.755 kb on + strand, within GFF3494 at 349.755 kb on + strand, within GFF3494 at 349.756 kb on - strand, within GFF3494 at 349.756 kb on - strand, within GFF3494 at 349.833 kb on + strand, within GFF3494 at 349.833 kb on + strand, within GFF3494 at 349.833 kb on + strand, within GFF3494 at 349.834 kb on - strand, within GFF3494 at 349.839 kb on + strand, within GFF3494 at 349.839 kb on + strand, within GFF3494 at 349.839 kb on + strand, within GFF3494 at 349.839 kb on + strand, within GFF3494 at 349.840 kb on - strand, within GFF3494 at 349.840 kb on - strand, within GFF3494 at 349.840 kb on - strand, within GFF3494 at 349.840 kb on - strand, within GFF3494 at 349.842 kb on + strand, within GFF3494 at 349.842 kb on + strand, within GFF3494 at 349.842 kb on + strand, within GFF3494 at 349.842 kb on + strand, within GFF3494 at 349.843 kb on - strand, within GFF3494 at 349.900 kb on + strand, within GFF3494 at 349.901 kb on - strand, within GFF3494 at 349.901 kb on - strand, within GFF3494 at 349.901 kb on - strand, within GFF3494 at 349.901 kb on - strand, within GFF3494 at 349.980 kb on + strand, within GFF3494 at 349.980 kb on + strand, within GFF3494 at 349.980 kb on + strand, within GFF3494 at 349.981 kb on - strand, within GFF3494 at 350.064 kb on + strand, within GFF3494 at 350.064 kb on + strand, within GFF3494 at 350.065 kb on - strand, within GFF3494 at 350.065 kb on - strand, within GFF3494 at 350.139 kb on + strand, within GFF3494 at 350.143 kb on - strand, within GFF3494 at 350.199 kb on + strand, within GFF3494 at 350.200 kb on - strand, within GFF3494
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 347,520 - GFF3491 0.57 -0.3 347,520 - GFF3491 0.57 +0.5 347,520 - GFF3491 0.57 +0.1 347,678 + GFF3491 0.80 +1.4 347,678 + GFF3491 0.80 +1.9 347,720 + GFF3491 0.86 +0.6 347,720 + GFF3491 0.86 +0.7 347,721 - GFF3491 0.86 -0.8 347,739 - GFF3491 0.89 +0.5 348,127 + +0.1 348,127 + +1.4 348,128 - -1.0 348,135 - +0.7 348,413 + GFF3492 0.87 -0.5 349,045 + GFF3493 0.70 +0.0 349,045 + GFF3493 0.70 -1.0 349,090 + GFF3493 0.75 -1.0 349,090 + GFF3493 0.75 +0.5 349,090 + GFF3493 0.75 +0.4 349,091 - GFF3493 0.76 -0.2 349,091 - GFF3493 0.76 -0.2 349,103 - GFF3493 0.77 -0.9 349,103 - GFF3493 0.77 -1.0 349,374 + +0.8 349,374 + -0.0 349,374 + -0.7 349,375 - +2.2 349,443 + +0.3 349,443 + -0.8 349,444 - +1.4 349,489 - +2.8 349,489 - +2.0 349,489 - +1.7 349,497 + -0.2 349,575 + GFF3494 0.14 +0.2 349,647 + GFF3494 0.19 -0.9 349,648 - GFF3494 0.19 +2.0 349,694 - GFF3494 0.22 +1.5 349,755 + GFF3494 0.26 +0.6 349,755 + GFF3494 0.26 -0.1 349,756 - GFF3494 0.26 +2.4 349,756 - GFF3494 0.26 +1.9 349,833 + GFF3494 0.32 -0.7 349,833 + GFF3494 0.32 -0.0 349,833 + GFF3494 0.32 -0.2 349,834 - GFF3494 0.32 +1.9 349,839 + GFF3494 0.32 +2.0 349,839 + GFF3494 0.32 -1.8 349,839 + GFF3494 0.32 +0.7 349,839 + GFF3494 0.32 +0.4 349,840 - GFF3494 0.32 +1.8 349,840 - GFF3494 0.32 +1.6 349,840 - GFF3494 0.32 +2.5 349,840 - GFF3494 0.32 +1.9 349,842 + GFF3494 0.33 -0.7 349,842 + GFF3494 0.33 +0.3 349,842 + GFF3494 0.33 -0.1 349,842 + GFF3494 0.33 -0.0 349,843 - GFF3494 0.33 +2.0 349,900 + GFF3494 0.37 -0.2 349,901 - GFF3494 0.37 +1.5 349,901 - GFF3494 0.37 +1.5 349,901 - GFF3494 0.37 +1.1 349,901 - GFF3494 0.37 +1.4 349,980 + GFF3494 0.42 +0.3 349,980 + GFF3494 0.42 -0.4 349,980 + GFF3494 0.42 +0.1 349,981 - GFF3494 0.42 +0.6 350,064 + GFF3494 0.48 -0.5 350,064 + GFF3494 0.48 +0.1 350,065 - GFF3494 0.48 +0.3 350,065 - GFF3494 0.48 -0.2 350,139 + GFF3494 0.54 +0.0 350,143 - GFF3494 0.54 +1.8 350,199 + GFF3494 0.58 +0.4 350,200 - GFF3494 0.58 +0.0
Or see this region's nucleotide sequence