Strain Fitness in Xanthobacter sp. DMC5 around GFF3486

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3484 and GFF3485 overlap by 4 nucleotidesGFF3485 and GFF3486 are separated by 16 nucleotidesGFF3486 and GFF3487 are separated by 34 nucleotidesGFF3487 and GFF3488 are separated by 138 nucleotides GFF3484 - hypothetical protein, at 340,638 to 341,225 GFF3484 GFF3485 - Carnitine monooxygenase reductase subunit, at 341,222 to 342,178 GFF3485 GFF3486 - hypothetical protein, at 342,195 to 343,256 GFF3486 GFF3487 - hypothetical protein, at 343,291 to 343,926 GFF3487 GFF3488 - hypothetical protein, at 344,065 to 344,904 GFF3488 Position (kb) 342 343 344Strain fitness (log2 ratio) -2 -1 0 1at 341.217 kb on + strandat 341.218 kb on - strandat 341.218 kb on - strandat 341.393 kb on + strand, within GFF3485at 341.430 kb on - strand, within GFF3485at 341.477 kb on + strand, within GFF3485at 341.477 kb on + strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.802 kb on - strand, within GFF3485at 341.802 kb on - strand, within GFF3485at 341.802 kb on - strand, within GFF3485at 341.802 kb on - strand, within GFF3485at 341.802 kb on - strand, within GFF3485at 342.243 kb on + strandat 342.244 kb on - strandat 342.300 kb on + strandat 342.301 kb on - strandat 342.306 kb on + strand, within GFF3486at 342.306 kb on + strand, within GFF3486at 342.306 kb on + strand, within GFF3486at 342.306 kb on + strand, within GFF3486at 342.306 kb on + strand, within GFF3486at 342.307 kb on - strand, within GFF3486at 342.307 kb on - strand, within GFF3486at 342.384 kb on + strand, within GFF3486at 342.384 kb on + strand, within GFF3486at 342.385 kb on - strand, within GFF3486at 342.385 kb on - strand, within GFF3486at 342.385 kb on - strand, within GFF3486at 342.386 kb on + strand, within GFF3486at 342.387 kb on - strand, within GFF3486at 342.636 kb on + strand, within GFF3486at 342.808 kb on + strand, within GFF3486at 342.809 kb on - strand, within GFF3486at 342.829 kb on - strand, within GFF3486at 342.846 kb on + strand, within GFF3486at 342.846 kb on + strand, within GFF3486at 342.918 kb on + strand, within GFF3486at 342.918 kb on + strand, within GFF3486at 343.005 kb on + strand, within GFF3486at 343.050 kb on + strand, within GFF3486at 343.051 kb on - strand, within GFF3486at 343.143 kb on + strand, within GFF3486at 343.143 kb on + strand, within GFF3486at 343.143 kb on + strand, within GFF3486at 343.421 kb on + strand, within GFF3487at 343.422 kb on - strand, within GFF3487at 343.422 kb on - strand, within GFF3487at 343.583 kb on + strand, within GFF3487at 343.583 kb on + strand, within GFF3487at 343.584 kb on - strand, within GFF3487at 343.670 kb on + strand, within GFF3487at 343.670 kb on + strand, within GFF3487at 343.671 kb on - strand, within GFF3487at 343.671 kb on - strand, within GFF3487at 343.948 kb on + strandat 343.951 kb on + strandat 343.951 kb on + strandat 343.952 kb on - strandat 344.033 kb on + strandat 344.034 kb on - strandat 344.078 kb on + strandat 344.078 kb on + strandat 344.141 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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341,217 + -0.6
341,218 - -0.1
341,218 - -0.2
341,393 + GFF3485 0.18 -0.0
341,430 - GFF3485 0.22 +0.6
341,477 + GFF3485 0.27 -0.6
341,477 + GFF3485 0.27 +1.4
341,478 - GFF3485 0.27 +0.1
341,478 - GFF3485 0.27 +0.2
341,478 - GFF3485 0.27 -0.7
341,478 - GFF3485 0.27 +0.6
341,478 - GFF3485 0.27 +0.4
341,478 - GFF3485 0.27 -0.6
341,478 - GFF3485 0.27 +0.6
341,801 + GFF3485 0.61 -0.3
341,801 + GFF3485 0.61 +1.0
341,801 + GFF3485 0.61 -2.2
341,801 + GFF3485 0.61 -0.1
341,801 + GFF3485 0.61 -0.1
341,801 + GFF3485 0.61 -0.3
341,801 + GFF3485 0.61 -0.4
341,801 + GFF3485 0.61 -0.3
341,801 + GFF3485 0.61 -0.3
341,801 + GFF3485 0.61 +0.1
341,802 - GFF3485 0.61 +1.0
341,802 - GFF3485 0.61 -0.4
341,802 - GFF3485 0.61 -0.3
341,802 - GFF3485 0.61 -0.8
341,802 - GFF3485 0.61 +0.9
342,243 + -0.7
342,244 - +1.2
342,300 + +0.1
342,301 - +0.1
342,306 + GFF3486 0.10 +0.8
342,306 + GFF3486 0.10 +1.0
342,306 + GFF3486 0.10 +0.4
342,306 + GFF3486 0.10 -0.1
342,306 + GFF3486 0.10 -0.5
342,307 - GFF3486 0.11 +0.7
342,307 - GFF3486 0.11 +0.5
342,384 + GFF3486 0.18 -0.3
342,384 + GFF3486 0.18 -0.2
342,385 - GFF3486 0.18 -0.4
342,385 - GFF3486 0.18 -0.5
342,385 - GFF3486 0.18 -0.6
342,386 + GFF3486 0.18 -0.1
342,387 - GFF3486 0.18 +0.5
342,636 + GFF3486 0.42 -1.9
342,808 + GFF3486 0.58 -0.2
342,809 - GFF3486 0.58 +0.3
342,829 - GFF3486 0.60 -0.3
342,846 + GFF3486 0.61 -0.2
342,846 + GFF3486 0.61 +0.1
342,918 + GFF3486 0.68 +1.1
342,918 + GFF3486 0.68 -1.2
343,005 + GFF3486 0.76 +1.0
343,050 + GFF3486 0.81 +0.4
343,051 - GFF3486 0.81 -0.2
343,143 + GFF3486 0.89 +0.1
343,143 + GFF3486 0.89 -0.2
343,143 + GFF3486 0.89 -0.1
343,421 + GFF3487 0.20 +0.3
343,422 - GFF3487 0.21 +0.5
343,422 - GFF3487 0.21 -0.1
343,583 + GFF3487 0.46 -1.0
343,583 + GFF3487 0.46 -0.3
343,584 - GFF3487 0.46 +0.6
343,670 + GFF3487 0.60 +0.3
343,670 + GFF3487 0.60 +0.1
343,671 - GFF3487 0.60 -0.3
343,671 - GFF3487 0.60 -0.5
343,948 + +0.5
343,951 + -0.1
343,951 + -0.2
343,952 - +0.5
344,033 + +0.8
344,034 - +0.6
344,078 + -0.0
344,078 + -0.5
344,141 - +0.6

Or see this region's nucleotide sequence