Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3478 and GFF3479 are separated by 119 nucleotides GFF3479 and GFF3480 are separated by 402 nucleotides
GFF3478 - Putative ring-cleaving dioxygenase MhqA, at 331,761 to 332,726
GFF3478
GFF3479 - Aminomethyltransferase, at 332,846 to 333,976
GFF3479
GFF3480 - putative acyl-CoA dehydrogenase fadE25, at 334,379 to 335,782
GFF3480
Position (kb) 332
333
334 Strain fitness (log2 ratio) -1
0
1
2 at 331.852 kb on - strand at 331.914 kb on + strand, within GFF3478 at 331.926 kb on + strand, within GFF3478 at 331.927 kb on - strand, within GFF3478 at 332.056 kb on - strand, within GFF3478 at 332.328 kb on + strand, within GFF3478 at 332.328 kb on + strand, within GFF3478 at 332.328 kb on + strand, within GFF3478 at 332.488 kb on - strand, within GFF3478 at 332.488 kb on - strand, within GFF3478 at 332.553 kb on + strand, within GFF3478 at 332.554 kb on - strand, within GFF3478 at 332.554 kb on - strand, within GFF3478 at 332.892 kb on + strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 332.893 kb on - strand at 333.021 kb on + strand, within GFF3479 at 333.021 kb on + strand, within GFF3479 at 333.022 kb on - strand, within GFF3479 at 333.022 kb on - strand, within GFF3479 at 333.022 kb on - strand, within GFF3479 at 333.022 kb on - strand, within GFF3479 at 333.384 kb on + strand, within GFF3479 at 333.385 kb on - strand, within GFF3479 at 333.402 kb on + strand, within GFF3479 at 333.403 kb on - strand, within GFF3479 at 333.403 kb on - strand, within GFF3479 at 333.462 kb on + strand, within GFF3479 at 333.463 kb on - strand, within GFF3479 at 333.467 kb on + strand, within GFF3479 at 333.467 kb on + strand, within GFF3479 at 333.467 kb on + strand, within GFF3479 at 333.468 kb on - strand, within GFF3479 at 333.468 kb on - strand, within GFF3479 at 333.654 kb on + strand, within GFF3479 at 333.654 kb on + strand, within GFF3479 at 333.737 kb on - strand, within GFF3479 at 333.855 kb on + strand, within GFF3479 at 333.856 kb on - strand, within GFF3479 at 333.871 kb on - strand at 334.137 kb on + strand at 334.137 kb on + strand at 334.226 kb on + strand at 334.227 kb on - strand at 334.378 kb on + strand at 334.379 kb on - strand at 334.541 kb on + strand, within GFF3480 at 334.541 kb on + strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.542 kb on - strand, within GFF3480 at 334.547 kb on + strand, within GFF3480 at 334.673 kb on + strand, within GFF3480 at 334.701 kb on - strand, within GFF3480 at 334.847 kb on + strand, within GFF3480 at 334.940 kb on + strand, within GFF3480
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 331,852 - -0.1 331,914 + GFF3478 0.16 +1.0 331,926 + GFF3478 0.17 -0.4 331,927 - GFF3478 0.17 -0.3 332,056 - GFF3478 0.31 -0.2 332,328 + GFF3478 0.59 -0.3 332,328 + GFF3478 0.59 -0.5 332,328 + GFF3478 0.59 -0.3 332,488 - GFF3478 0.75 +0.4 332,488 - GFF3478 0.75 +0.6 332,553 + GFF3478 0.82 +0.8 332,554 - GFF3478 0.82 +0.8 332,554 - GFF3478 0.82 -0.2 332,892 + -0.4 332,893 - -1.1 332,893 - -0.7 332,893 - +0.8 332,893 - -0.1 332,893 - -0.7 332,893 - -0.3 332,893 - -0.0 332,893 - +0.3 333,021 + GFF3479 0.15 +0.5 333,021 + GFF3479 0.15 +2.1 333,022 - GFF3479 0.16 +0.5 333,022 - GFF3479 0.16 -0.6 333,022 - GFF3479 0.16 -0.4 333,022 - GFF3479 0.16 -0.2 333,384 + GFF3479 0.48 -0.4 333,385 - GFF3479 0.48 +0.1 333,402 + GFF3479 0.49 -0.2 333,403 - GFF3479 0.49 +1.4 333,403 - GFF3479 0.49 -0.6 333,462 + GFF3479 0.54 +0.4 333,463 - GFF3479 0.55 +0.8 333,467 + GFF3479 0.55 +0.4 333,467 + GFF3479 0.55 -1.3 333,467 + GFF3479 0.55 -0.2 333,468 - GFF3479 0.55 +0.1 333,468 - GFF3479 0.55 -0.1 333,654 + GFF3479 0.71 -0.2 333,654 + GFF3479 0.71 +0.1 333,737 - GFF3479 0.79 +0.3 333,855 + GFF3479 0.89 +0.1 333,856 - GFF3479 0.89 -0.7 333,871 - +0.0 334,137 + +0.4 334,137 + -0.4 334,226 + -0.0 334,227 - -0.8 334,378 + -0.1 334,379 - -0.2 334,541 + GFF3480 0.12 -0.3 334,541 + GFF3480 0.12 -0.1 334,542 - GFF3480 0.12 +0.9 334,542 - GFF3480 0.12 +0.2 334,542 - GFF3480 0.12 -0.8 334,542 - GFF3480 0.12 -0.2 334,542 - GFF3480 0.12 -0.3 334,542 - GFF3480 0.12 +0.2 334,547 + GFF3480 0.12 +0.2 334,673 + GFF3480 0.21 -0.4 334,701 - GFF3480 0.23 -0.2 334,847 + GFF3480 0.33 -0.1 334,940 + GFF3480 0.40 +0.4
Or see this region's nucleotide sequence