Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3475 and GFF3476 overlap by 4 nucleotides GFF3476 and GFF3477 are separated by 86 nucleotides GFF3477 and GFF3478 are separated by 270 nucleotides
GFF3475 - hypothetical protein, at 329,165 to 329,560
GFF3475
GFF3476 - 7-carboxy-7-deazaguanine synthase, at 329,557 to 330,192
GFF3476
GFF3477 - hypothetical protein, at 330,279 to 331,490
GFF3477
GFF3478 - Putative ring-cleaving dioxygenase MhqA, at 331,761 to 332,726
GFF3478
Position (kb) 330
331
332 Strain fitness (log2 ratio) -1
0
1 at 329.316 kb on + strand, within GFF3475 at 329.317 kb on - strand, within GFF3475 at 329.428 kb on - strand, within GFF3475 at 329.428 kb on - strand, within GFF3475 at 329.621 kb on + strand, within GFF3476 at 329.962 kb on + strand, within GFF3476 at 330.185 kb on + strand at 330.186 kb on - strand at 330.550 kb on + strand, within GFF3477 at 330.550 kb on + strand, within GFF3477 at 330.550 kb on + strand, within GFF3477 at 330.551 kb on - strand, within GFF3477 at 330.551 kb on - strand, within GFF3477 at 330.786 kb on - strand, within GFF3477 at 330.786 kb on - strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.899 kb on - strand, within GFF3477 at 330.986 kb on - strand, within GFF3477 at 331.013 kb on - strand, within GFF3477 at 331.501 kb on + strand at 331.502 kb on - strand at 331.502 kb on - strand at 331.836 kb on + strand at 331.837 kb on - strand at 331.852 kb on - strand at 331.914 kb on + strand, within GFF3478 at 331.926 kb on + strand, within GFF3478 at 331.927 kb on - strand, within GFF3478 at 332.056 kb on - strand, within GFF3478 at 332.328 kb on + strand, within GFF3478 at 332.328 kb on + strand, within GFF3478 at 332.328 kb on + strand, within GFF3478 at 332.488 kb on - strand, within GFF3478 at 332.488 kb on - strand, within GFF3478
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 329,316 + GFF3475 0.38 +1.5 329,317 - GFF3475 0.38 +0.6 329,428 - GFF3475 0.66 +0.5 329,428 - GFF3475 0.66 +1.6 329,621 + GFF3476 0.10 -0.3 329,962 + GFF3476 0.64 +0.9 330,185 + -0.4 330,186 - -0.2 330,550 + GFF3477 0.22 -0.7 330,550 + GFF3477 0.22 -0.7 330,550 + GFF3477 0.22 +0.3 330,551 - GFF3477 0.22 -0.7 330,551 - GFF3477 0.22 +0.6 330,786 - GFF3477 0.42 +0.1 330,786 - GFF3477 0.42 -0.1 330,892 + GFF3477 0.51 -0.2 330,892 + GFF3477 0.51 +0.5 330,892 + GFF3477 0.51 +0.1 330,892 + GFF3477 0.51 -0.4 330,892 + GFF3477 0.51 -0.3 330,898 + GFF3477 0.51 +0.0 330,898 + GFF3477 0.51 -0.2 330,898 + GFF3477 0.51 +0.6 330,898 + GFF3477 0.51 +0.2 330,898 + GFF3477 0.51 +0.1 330,899 - GFF3477 0.51 -0.1 330,986 - GFF3477 0.58 -0.4 331,013 - GFF3477 0.61 -0.5 331,501 + +0.6 331,502 - -0.0 331,502 - -0.0 331,836 + -0.6 331,837 - +0.2 331,852 - -0.1 331,914 + GFF3478 0.16 +1.0 331,926 + GFF3478 0.17 -0.4 331,927 - GFF3478 0.17 -0.3 332,056 - GFF3478 0.31 -0.2 332,328 + GFF3478 0.59 -0.3 332,328 + GFF3478 0.59 -0.5 332,328 + GFF3478 0.59 -0.3 332,488 - GFF3478 0.75 +0.4 332,488 - GFF3478 0.75 +0.6
Or see this region's nucleotide sequence