Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3473 and GFF3474 are separated by 86 nucleotides GFF3474 and GFF3475 are separated by 7 nucleotides GFF3475 and GFF3476 overlap by 4 nucleotides
GFF3473 - hypothetical protein, at 327,350 to 328,510
GFF3473
GFF3474 - Quinone reductase, at 328,597 to 329,157
GFF3474
GFF3475 - hypothetical protein, at 329,165 to 329,560
GFF3475
GFF3476 - 7-carboxy-7-deazaguanine synthase, at 329,557 to 330,192
GFF3476
Position (kb) 328
329
330 Strain fitness (log2 ratio) -2
-1
0
1 at 327.955 kb on + strand, within GFF3473 at 327.956 kb on - strand, within GFF3473 at 328.230 kb on - strand, within GFF3473 at 328.247 kb on + strand, within GFF3473 at 328.247 kb on + strand, within GFF3473 at 328.247 kb on + strand, within GFF3473 at 328.248 kb on - strand, within GFF3473 at 328.325 kb on + strand, within GFF3473 at 328.325 kb on + strand, within GFF3473 at 328.325 kb on + strand, within GFF3473 at 328.325 kb on + strand, within GFF3473 at 328.326 kb on - strand, within GFF3473 at 328.326 kb on - strand, within GFF3473 at 328.326 kb on - strand, within GFF3473 at 328.327 kb on + strand, within GFF3473 at 328.328 kb on - strand, within GFF3473 at 328.328 kb on - strand, within GFF3473 at 328.406 kb on + strand at 328.406 kb on + strand at 328.482 kb on - strand at 328.555 kb on + strand at 328.555 kb on + strand at 328.555 kb on + strand at 328.556 kb on - strand at 328.729 kb on + strand, within GFF3474 at 328.729 kb on + strand, within GFF3474 at 328.729 kb on + strand, within GFF3474 at 328.730 kb on - strand, within GFF3474 at 328.730 kb on - strand, within GFF3474 at 328.730 kb on - strand, within GFF3474 at 328.730 kb on - strand, within GFF3474 at 328.817 kb on + strand, within GFF3474 at 328.828 kb on + strand, within GFF3474 at 328.834 kb on + strand, within GFF3474 at 328.834 kb on + strand, within GFF3474 at 328.834 kb on + strand, within GFF3474 at 328.834 kb on + strand, within GFF3474 at 328.834 kb on + strand, within GFF3474 at 328.835 kb on - strand, within GFF3474 at 328.835 kb on - strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.964 kb on - strand, within GFF3474 at 329.091 kb on + strand, within GFF3474 at 329.092 kb on - strand, within GFF3474 at 329.119 kb on + strand at 329.188 kb on - strand at 329.206 kb on - strand, within GFF3475 at 329.316 kb on + strand, within GFF3475 at 329.317 kb on - strand, within GFF3475 at 329.428 kb on - strand, within GFF3475 at 329.428 kb on - strand, within GFF3475 at 329.621 kb on + strand, within GFF3476 at 329.962 kb on + strand, within GFF3476
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 327,955 + GFF3473 0.52 -1.0 327,956 - GFF3473 0.52 -0.5 328,230 - GFF3473 0.76 +0.5 328,247 + GFF3473 0.77 +0.1 328,247 + GFF3473 0.77 -0.2 328,247 + GFF3473 0.77 -0.4 328,248 - GFF3473 0.77 +0.2 328,325 + GFF3473 0.84 +0.1 328,325 + GFF3473 0.84 -0.0 328,325 + GFF3473 0.84 +0.1 328,325 + GFF3473 0.84 +0.1 328,326 - GFF3473 0.84 -0.3 328,326 - GFF3473 0.84 -0.2 328,326 - GFF3473 0.84 -0.7 328,327 + GFF3473 0.84 -0.3 328,328 - GFF3473 0.84 +0.1 328,328 - GFF3473 0.84 -0.6 328,406 + +0.4 328,406 + +0.1 328,482 - -0.9 328,555 + -0.2 328,555 + -0.1 328,555 + -0.3 328,556 - -1.4 328,729 + GFF3474 0.24 +0.3 328,729 + GFF3474 0.24 -0.4 328,729 + GFF3474 0.24 -0.9 328,730 - GFF3474 0.24 -0.4 328,730 - GFF3474 0.24 -0.5 328,730 - GFF3474 0.24 -2.0 328,730 - GFF3474 0.24 -0.2 328,817 + GFF3474 0.39 -0.5 328,828 + GFF3474 0.41 -0.0 328,834 + GFF3474 0.42 -0.5 328,834 + GFF3474 0.42 +0.2 328,834 + GFF3474 0.42 +0.1 328,834 + GFF3474 0.42 +1.6 328,834 + GFF3474 0.42 -0.1 328,835 - GFF3474 0.42 +0.3 328,835 - GFF3474 0.42 +0.6 328,963 + GFF3474 0.65 +0.1 328,963 + GFF3474 0.65 -0.9 328,963 + GFF3474 0.65 +0.8 328,963 + GFF3474 0.65 -0.2 328,963 + GFF3474 0.65 -1.3 328,963 + GFF3474 0.65 -0.2 328,964 - GFF3474 0.65 +0.6 329,091 + GFF3474 0.88 +0.2 329,092 - GFF3474 0.88 +0.6 329,119 + +0.9 329,188 - -0.4 329,206 - GFF3475 0.10 +0.4 329,316 + GFF3475 0.38 +1.5 329,317 - GFF3475 0.38 +0.6 329,428 - GFF3475 0.66 +0.5 329,428 - GFF3475 0.66 +1.6 329,621 + GFF3476 0.10 -0.3 329,962 + GFF3476 0.64 +0.9
Or see this region's nucleotide sequence