Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3449 and GFF3450 are separated by 64 nucleotides GFF3450 and GFF3451 are separated by 8 nucleotides GFF3451 and GFF3452 overlap by 4 nucleotides
GFF3449 - HTH-type transcriptional regulator LutR, at 299,988 to 300,728
GFF3449
GFF3450 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 300,793 to 301,548
GFF3450
GFF3451 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 301,557 to 302,318
GFF3451
GFF3452 - Phthiocerol synthesis polyketide synthase type I PpsC, at 302,315 to 303,319
GFF3452
Position (kb) 301
302
303 Strain fitness (log2 ratio) -1
0
1 at 300.565 kb on + strand, within GFF3449 at 300.566 kb on - strand, within GFF3449 at 300.566 kb on - strand, within GFF3449 at 300.566 kb on - strand, within GFF3449 at 300.687 kb on - strand at 300.804 kb on + strand at 300.806 kb on + strand at 300.806 kb on + strand at 300.806 kb on + strand at 300.807 kb on - strand at 300.921 kb on + strand, within GFF3450 at 300.921 kb on + strand, within GFF3450 at 301.175 kb on + strand, within GFF3450 at 301.176 kb on - strand, within GFF3450 at 301.180 kb on + strand, within GFF3450 at 301.217 kb on + strand, within GFF3450 at 301.217 kb on + strand, within GFF3450 at 301.218 kb on - strand, within GFF3450 at 301.840 kb on + strand, within GFF3451 at 301.841 kb on - strand, within GFF3451 at 301.864 kb on + strand, within GFF3451 at 301.864 kb on + strand, within GFF3451 at 301.865 kb on - strand, within GFF3451 at 301.865 kb on - strand, within GFF3451 at 301.865 kb on - strand, within GFF3451 at 302.128 kb on + strand, within GFF3451 at 302.224 kb on + strand, within GFF3451 at 302.224 kb on + strand, within GFF3451 at 302.224 kb on + strand, within GFF3451 at 302.224 kb on + strand, within GFF3451 at 302.225 kb on - strand, within GFF3451 at 302.225 kb on - strand, within GFF3451 at 302.640 kb on + strand, within GFF3452 at 302.641 kb on - strand, within GFF3452 at 302.728 kb on - strand, within GFF3452 at 302.925 kb on + strand, within GFF3452 at 302.925 kb on + strand, within GFF3452 at 302.926 kb on - strand, within GFF3452 at 302.928 kb on + strand, within GFF3452 at 302.929 kb on - strand, within GFF3452 at 302.929 kb on - strand, within GFF3452 at 303.009 kb on + strand, within GFF3452 at 303.010 kb on - strand, within GFF3452 at 303.019 kb on - strand, within GFF3452 at 303.019 kb on - strand, within GFF3452 at 303.147 kb on + strand, within GFF3452 at 303.147 kb on + strand, within GFF3452 at 303.148 kb on - strand, within GFF3452 at 303.148 kb on - strand, within GFF3452 at 303.148 kb on - strand, within GFF3452 at 303.148 kb on - strand, within GFF3452
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 300,565 + GFF3449 0.78 -1.2 300,566 - GFF3449 0.78 -0.3 300,566 - GFF3449 0.78 -1.1 300,566 - GFF3449 0.78 +0.7 300,687 - +0.4 300,804 + -0.4 300,806 + +1.1 300,806 + -0.1 300,806 + -0.8 300,807 - -0.7 300,921 + GFF3450 0.17 -0.0 300,921 + GFF3450 0.17 +0.0 301,175 + GFF3450 0.51 -1.0 301,176 - GFF3450 0.51 +0.4 301,180 + GFF3450 0.51 -0.1 301,217 + GFF3450 0.56 -0.0 301,217 + GFF3450 0.56 +0.0 301,218 - GFF3450 0.56 +0.5 301,840 + GFF3451 0.37 -0.3 301,841 - GFF3451 0.37 -0.6 301,864 + GFF3451 0.40 +0.5 301,864 + GFF3451 0.40 -0.4 301,865 - GFF3451 0.40 +0.0 301,865 - GFF3451 0.40 -0.3 301,865 - GFF3451 0.40 +0.2 302,128 + GFF3451 0.75 +0.3 302,224 + GFF3451 0.88 -0.2 302,224 + GFF3451 0.88 -1.2 302,224 + GFF3451 0.88 -0.4 302,224 + GFF3451 0.88 +0.4 302,225 - GFF3451 0.88 -0.3 302,225 - GFF3451 0.88 +1.4 302,640 + GFF3452 0.32 -0.8 302,641 - GFF3452 0.32 +0.6 302,728 - GFF3452 0.41 -0.0 302,925 + GFF3452 0.61 -0.1 302,925 + GFF3452 0.61 +0.2 302,926 - GFF3452 0.61 +0.0 302,928 + GFF3452 0.61 +0.0 302,929 - GFF3452 0.61 -0.4 302,929 - GFF3452 0.61 +0.2 303,009 + GFF3452 0.69 +0.9 303,010 - GFF3452 0.69 -0.9 303,019 - GFF3452 0.70 -0.4 303,019 - GFF3452 0.70 +0.1 303,147 + GFF3452 0.83 +0.0 303,147 + GFF3452 0.83 +0.6 303,148 - GFF3452 0.83 -0.8 303,148 - GFF3452 0.83 +0.4 303,148 - GFF3452 0.83 -0.9 303,148 - GFF3452 0.83 -0.1
Or see this region's nucleotide sequence