Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3434 and GFF3435 are separated by 245 nucleotides GFF3435 and GFF3436 overlap by 4 nucleotides
GFF3434 - Phosphate-import protein PhnD, at 286,172 to 287,080
GFF3434
GFF3435 - hypothetical protein, at 287,326 to 288,210
GFF3435
GFF3436 - Phosphate-import permease protein PhnE, at 288,207 to 289,067
GFF3436
Position (kb) 287
288
289 Strain fitness (log2 ratio) -1
0
1 at 286.337 kb on + strand, within GFF3434 at 286.338 kb on - strand, within GFF3434 at 286.338 kb on - strand, within GFF3434 at 286.389 kb on - strand, within GFF3434 at 286.439 kb on + strand, within GFF3434 at 286.529 kb on + strand, within GFF3434 at 286.544 kb on + strand, within GFF3434 at 286.544 kb on + strand, within GFF3434 at 286.545 kb on - strand, within GFF3434 at 286.566 kb on - strand, within GFF3434 at 286.566 kb on - strand, within GFF3434 at 286.566 kb on - strand, within GFF3434 at 286.566 kb on - strand, within GFF3434 at 286.566 kb on - strand, within GFF3434 at 286.700 kb on + strand, within GFF3434 at 286.701 kb on - strand, within GFF3434 at 286.701 kb on - strand, within GFF3434 at 286.725 kb on + strand, within GFF3434 at 286.827 kb on - strand, within GFF3434 at 286.827 kb on - strand, within GFF3434 at 286.827 kb on - strand, within GFF3434 at 286.847 kb on + strand, within GFF3434 at 286.848 kb on - strand, within GFF3434 at 286.877 kb on + strand, within GFF3434 at 286.877 kb on + strand, within GFF3434 at 286.884 kb on - strand, within GFF3434 at 286.976 kb on + strand, within GFF3434 at 287.021 kb on + strand at 287.022 kb on - strand at 287.227 kb on + strand at 287.261 kb on + strand at 287.261 kb on + strand at 287.622 kb on + strand, within GFF3435 at 287.622 kb on + strand, within GFF3435 at 287.889 kb on + strand, within GFF3435 at 287.890 kb on - strand, within GFF3435 at 288.097 kb on + strand, within GFF3435 at 288.098 kb on - strand, within GFF3435 at 288.459 kb on + strand, within GFF3436 at 288.459 kb on + strand, within GFF3436 at 288.459 kb on + strand, within GFF3436 at 288.459 kb on + strand, within GFF3436 at 288.460 kb on - strand, within GFF3436 at 288.645 kb on + strand, within GFF3436 at 288.645 kb on + strand, within GFF3436 at 288.645 kb on + strand, within GFF3436 at 288.646 kb on - strand, within GFF3436 at 288.646 kb on - strand, within GFF3436 at 288.646 kb on - strand, within GFF3436 at 288.646 kb on - strand, within GFF3436 at 288.646 kb on - strand, within GFF3436 at 288.858 kb on + strand, within GFF3436 at 288.859 kb on - strand, within GFF3436 at 288.861 kb on + strand, within GFF3436 at 288.861 kb on + strand, within GFF3436 at 288.862 kb on - strand, within GFF3436 at 288.862 kb on - strand, within GFF3436
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 286,337 + GFF3434 0.18 +0.5 286,338 - GFF3434 0.18 +0.1 286,338 - GFF3434 0.18 -0.3 286,389 - GFF3434 0.24 -0.2 286,439 + GFF3434 0.29 -0.4 286,529 + GFF3434 0.39 -0.3 286,544 + GFF3434 0.41 -1.3 286,544 + GFF3434 0.41 -0.1 286,545 - GFF3434 0.41 -0.2 286,566 - GFF3434 0.43 +0.7 286,566 - GFF3434 0.43 -0.4 286,566 - GFF3434 0.43 -0.3 286,566 - GFF3434 0.43 -1.3 286,566 - GFF3434 0.43 -0.1 286,700 + GFF3434 0.58 +0.8 286,701 - GFF3434 0.58 -0.3 286,701 - GFF3434 0.58 -0.4 286,725 + GFF3434 0.61 -0.2 286,827 - GFF3434 0.72 -0.7 286,827 - GFF3434 0.72 -0.0 286,827 - GFF3434 0.72 -0.9 286,847 + GFF3434 0.74 +0.1 286,848 - GFF3434 0.74 -0.9 286,877 + GFF3434 0.78 +0.5 286,877 + GFF3434 0.78 +0.1 286,884 - GFF3434 0.78 -0.2 286,976 + GFF3434 0.88 +0.7 287,021 + -0.6 287,022 - -0.1 287,227 + -1.2 287,261 + -0.1 287,261 + +0.9 287,622 + GFF3435 0.33 +0.1 287,622 + GFF3435 0.33 +0.1 287,889 + GFF3435 0.64 +0.9 287,890 - GFF3435 0.64 -0.1 288,097 + GFF3435 0.87 +0.1 288,098 - GFF3435 0.87 -0.5 288,459 + GFF3436 0.29 -0.1 288,459 + GFF3436 0.29 -0.2 288,459 + GFF3436 0.29 +0.3 288,459 + GFF3436 0.29 -0.7 288,460 - GFF3436 0.29 -1.2 288,645 + GFF3436 0.51 +0.7 288,645 + GFF3436 0.51 +1.0 288,645 + GFF3436 0.51 -0.0 288,646 - GFF3436 0.51 +0.3 288,646 - GFF3436 0.51 -0.4 288,646 - GFF3436 0.51 +1.1 288,646 - GFF3436 0.51 -0.1 288,646 - GFF3436 0.51 +0.2 288,858 + GFF3436 0.76 -1.3 288,859 - GFF3436 0.76 +0.1 288,861 + GFF3436 0.76 +0.7 288,861 + GFF3436 0.76 -0.3 288,862 - GFF3436 0.76 +0.0 288,862 - GFF3436 0.76 -0.2
Or see this region's nucleotide sequence