Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3426 and GFF3427 are separated by 146 nucleotides GFF3427 and GFF3428 are separated by 371 nucleotides
GFF3426 - FAD-dependent urate hydroxylase, at 272,786 to 274,243
GFF3426
GFF3427 - Glutamine-dependent NAD(+) synthetase, at 274,390 to 276,435
GFF3427
GFF3428 - hypothetical protein, at 276,807 to 279,047
GFF3428
Position (kb) 274
275
276
277 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 273.833 kb on + strand, within GFF3426 at 273.855 kb on - strand, within GFF3426 at 273.855 kb on - strand, within GFF3426 at 273.948 kb on - strand, within GFF3426 at 274.196 kb on + strand at 274.197 kb on - strand at 274.197 kb on - strand at 274.197 kb on - strand at 274.197 kb on - strand at 274.197 kb on - strand at 274.197 kb on - strand at 274.344 kb on + strand at 274.564 kb on + strand at 274.565 kb on - strand at 274.565 kb on - strand at 274.702 kb on + strand, within GFF3427 at 274.703 kb on - strand, within GFF3427 at 274.759 kb on + strand, within GFF3427 at 274.760 kb on - strand, within GFF3427 at 274.783 kb on + strand, within GFF3427 at 274.783 kb on + strand, within GFF3427 at 275.077 kb on + strand, within GFF3427 at 275.077 kb on + strand, within GFF3427 at 275.083 kb on + strand, within GFF3427 at 275.084 kb on - strand, within GFF3427 at 275.416 kb on + strand, within GFF3427 at 275.417 kb on - strand, within GFF3427 at 275.426 kb on - strand, within GFF3427 at 275.584 kb on + strand, within GFF3427 at 275.584 kb on + strand, within GFF3427 at 275.585 kb on - strand, within GFF3427 at 275.585 kb on - strand, within GFF3427 at 275.744 kb on - strand, within GFF3427 at 275.744 kb on - strand, within GFF3427 at 275.789 kb on - strand, within GFF3427 at 275.789 kb on - strand, within GFF3427 at 275.789 kb on - strand, within GFF3427 at 275.872 kb on + strand, within GFF3427 at 275.873 kb on - strand, within GFF3427 at 275.873 kb on - strand, within GFF3427 at 275.900 kb on - strand, within GFF3427 at 276.115 kb on + strand, within GFF3427 at 276.115 kb on + strand, within GFF3427 at 276.433 kb on + strand at 276.626 kb on - strand at 276.688 kb on + strand at 276.776 kb on + strand at 276.776 kb on + strand at 276.969 kb on + strand at 276.969 kb on + strand at 276.969 kb on + strand at 276.970 kb on - strand at 276.970 kb on - strand at 276.970 kb on - strand at 277.014 kb on - strand at 277.014 kb on - strand at 277.014 kb on - strand at 277.014 kb on - strand at 277.245 kb on + strand, within GFF3428 at 277.245 kb on + strand, within GFF3428 at 277.245 kb on + strand, within GFF3428 at 277.245 kb on + strand, within GFF3428 at 277.245 kb on + strand, within GFF3428 at 277.246 kb on - strand, within GFF3428 at 277.246 kb on - strand, within GFF3428 at 277.246 kb on - strand, within GFF3428 at 277.374 kb on + strand, within GFF3428 at 277.374 kb on + strand, within GFF3428 at 277.374 kb on + strand, within GFF3428 at 277.375 kb on - strand, within GFF3428 at 277.375 kb on - strand, within GFF3428 at 277.375 kb on - strand, within GFF3428 at 277.392 kb on + strand, within GFF3428 at 277.392 kb on + strand, within GFF3428 at 277.392 kb on + strand, within GFF3428 at 277.393 kb on - strand, within GFF3428 at 277.393 kb on - strand, within GFF3428 at 277.393 kb on - strand, within GFF3428 at 277.393 kb on - strand, within GFF3428
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 273,833 + GFF3426 0.72 -0.4 273,855 - GFF3426 0.73 -0.4 273,855 - GFF3426 0.73 -1.1 273,948 - GFF3426 0.80 -0.1 274,196 + +0.5 274,197 - +0.4 274,197 - -1.1 274,197 - -0.7 274,197 - +0.0 274,197 - +0.0 274,197 - +0.0 274,344 + -0.3 274,564 + +0.3 274,565 - -0.6 274,565 - -0.6 274,702 + GFF3427 0.15 -0.2 274,703 - GFF3427 0.15 -1.0 274,759 + GFF3427 0.18 -0.1 274,760 - GFF3427 0.18 -0.2 274,783 + GFF3427 0.19 -1.9 274,783 + GFF3427 0.19 +0.6 275,077 + GFF3427 0.34 -1.2 275,077 + GFF3427 0.34 -0.5 275,083 + GFF3427 0.34 -0.8 275,084 - GFF3427 0.34 -1.0 275,416 + GFF3427 0.50 -1.9 275,417 - GFF3427 0.50 -1.6 275,426 - GFF3427 0.51 -1.2 275,584 + GFF3427 0.58 -0.6 275,584 + GFF3427 0.58 -1.2 275,585 - GFF3427 0.58 -0.9 275,585 - GFF3427 0.58 +0.6 275,744 - GFF3427 0.66 -2.9 275,744 - GFF3427 0.66 -0.1 275,789 - GFF3427 0.68 +0.1 275,789 - GFF3427 0.68 -1.6 275,789 - GFF3427 0.68 -1.1 275,872 + GFF3427 0.72 -0.2 275,873 - GFF3427 0.72 -1.9 275,873 - GFF3427 0.72 -1.1 275,900 - GFF3427 0.74 -2.6 276,115 + GFF3427 0.84 -0.7 276,115 + GFF3427 0.84 -1.5 276,433 + +0.4 276,626 - -0.4 276,688 + -0.5 276,776 + +0.0 276,776 + +0.6 276,969 + -0.2 276,969 + -0.8 276,969 + -0.5 276,970 - +0.5 276,970 - -0.3 276,970 - -0.3 277,014 - -0.2 277,014 - -1.2 277,014 - +0.4 277,014 - -0.4 277,245 + GFF3428 0.20 +1.6 277,245 + GFF3428 0.20 -0.2 277,245 + GFF3428 0.20 -1.3 277,245 + GFF3428 0.20 -0.1 277,245 + GFF3428 0.20 -2.0 277,246 - GFF3428 0.20 +1.1 277,246 - GFF3428 0.20 +0.0 277,246 - GFF3428 0.20 +0.8 277,374 + GFF3428 0.25 -0.2 277,374 + GFF3428 0.25 -0.1 277,374 + GFF3428 0.25 -0.1 277,375 - GFF3428 0.25 -0.1 277,375 - GFF3428 0.25 +0.7 277,375 - GFF3428 0.25 -0.3 277,392 + GFF3428 0.26 -0.7 277,392 + GFF3428 0.26 -0.9 277,392 + GFF3428 0.26 -0.4 277,393 - GFF3428 0.26 +0.2 277,393 - GFF3428 0.26 +0.3 277,393 - GFF3428 0.26 -0.3 277,393 - GFF3428 0.26 +0.8
Or see this region's nucleotide sequence