Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF340 and GFF341 overlap by 1 nucleotides GFF341 and GFF342 are separated by 118 nucleotides GFF342 and GFF343 overlap by 20 nucleotides GFF343 and GFF344 overlap by 11 nucleotides
GFF340 - hypothetical protein, at 345,861 to 346,739
GFF340
GFF341 - hypothetical protein, at 346,739 to 347,107
GFF341
GFF342 - hypothetical protein, at 347,226 to 347,552
GFF342
GFF343 - hypothetical protein, at 347,533 to 347,757
GFF343
GFF344 - Chaperone protein HtpG, at 347,747 to 350,356
GFF344
Position (kb) 347
348 Strain fitness (log2 ratio) -1
0
1 at 346.267 kb on + strand, within GFF340 at 346.267 kb on + strand, within GFF340 at 346.267 kb on + strand, within GFF340 at 346.268 kb on - strand, within GFF340 at 346.268 kb on - strand, within GFF340 at 346.268 kb on - strand, within GFF340 at 346.428 kb on + strand, within GFF340 at 346.428 kb on + strand, within GFF340 at 346.428 kb on + strand, within GFF340 at 346.428 kb on + strand, within GFF340 at 346.429 kb on - strand, within GFF340 at 346.429 kb on - strand, within GFF340 at 346.429 kb on - strand, within GFF340 at 346.429 kb on - strand, within GFF340 at 346.620 kb on + strand, within GFF340 at 346.620 kb on + strand, within GFF340 at 347.044 kb on + strand, within GFF341 at 347.105 kb on + strand at 347.105 kb on + strand at 347.106 kb on - strand at 347.106 kb on - strand at 347.106 kb on - strand at 347.106 kb on - strand at 347.112 kb on + strand at 347.112 kb on + strand at 347.422 kb on + strand, within GFF342 at 347.422 kb on + strand, within GFF342 at 347.423 kb on - strand, within GFF342 at 347.423 kb on - strand, within GFF342 at 347.550 kb on + strand at 347.550 kb on + strand at 347.551 kb on - strand at 347.806 kb on - strand at 347.824 kb on + strand at 347.824 kb on + strand at 347.825 kb on - strand at 347.825 kb on - strand at 347.868 kb on + strand at 347.868 kb on + strand at 347.869 kb on - strand at 347.907 kb on - strand at 347.907 kb on - strand at 347.909 kb on + strand at 347.910 kb on - strand at 347.910 kb on - strand at 347.955 kb on - strand at 347.955 kb on - strand at 347.964 kb on - strand at 347.995 kb on + strand at 348.128 kb on + strand, within GFF344 at 348.255 kb on + strand, within GFF344 at 348.255 kb on + strand, within GFF344 at 348.260 kb on + strand, within GFF344 at 348.260 kb on + strand, within GFF344 at 348.261 kb on - strand, within GFF344 at 348.261 kb on - strand, within GFF344 at 348.261 kb on - strand, within GFF344 at 348.261 kb on - strand, within GFF344 at 348.358 kb on + strand, within GFF344 at 348.359 kb on - strand, within GFF344 at 348.423 kb on + strand, within GFF344 at 348.424 kb on - strand, within GFF344 at 348.424 kb on - strand, within GFF344 at 348.424 kb on - strand, within GFF344 at 348.427 kb on - strand, within GFF344 at 348.486 kb on - strand, within GFF344 at 348.486 kb on - strand, within GFF344 at 348.486 kb on - strand, within GFF344 at 348.486 kb on - strand, within GFF344 at 348.521 kb on - strand, within GFF344
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 346,267 + GFF340 0.46 +0.5 346,267 + GFF340 0.46 +1.5 346,267 + GFF340 0.46 -1.5 346,268 - GFF340 0.46 -0.0 346,268 - GFF340 0.46 -0.2 346,268 - GFF340 0.46 +0.3 346,428 + GFF340 0.65 -0.7 346,428 + GFF340 0.65 -0.9 346,428 + GFF340 0.65 -1.2 346,428 + GFF340 0.65 +0.1 346,429 - GFF340 0.65 -0.7 346,429 - GFF340 0.65 -0.4 346,429 - GFF340 0.65 -0.3 346,429 - GFF340 0.65 -1.5 346,620 + GFF340 0.86 -0.8 346,620 + GFF340 0.86 -0.2 347,044 + GFF341 0.83 +0.3 347,105 + +0.9 347,105 + +0.4 347,106 - -0.7 347,106 - -0.3 347,106 - +0.2 347,106 - -0.5 347,112 + -0.9 347,112 + -1.6 347,422 + GFF342 0.60 -0.4 347,422 + GFF342 0.60 +0.3 347,423 - GFF342 0.60 +0.2 347,423 - GFF342 0.60 +0.4 347,550 + -1.4 347,550 + +0.8 347,551 - +0.1 347,806 - +0.4 347,824 + +0.2 347,824 + +0.6 347,825 - -0.0 347,825 - -0.8 347,868 + -0.4 347,868 + -0.1 347,869 - +1.1 347,907 - -0.2 347,907 - -0.5 347,909 + -0.6 347,910 - -0.6 347,910 - -0.1 347,955 - -0.1 347,955 - +0.4 347,964 - +0.4 347,995 + +0.5 348,128 + GFF344 0.15 -0.3 348,255 + GFF344 0.19 +0.4 348,255 + GFF344 0.19 +0.3 348,260 + GFF344 0.20 +0.3 348,260 + GFF344 0.20 -0.5 348,261 - GFF344 0.20 +0.8 348,261 - GFF344 0.20 -0.3 348,261 - GFF344 0.20 +0.3 348,261 - GFF344 0.20 -0.3 348,358 + GFF344 0.23 -0.2 348,359 - GFF344 0.23 +0.0 348,423 + GFF344 0.26 -0.2 348,424 - GFF344 0.26 +0.1 348,424 - GFF344 0.26 -0.0 348,424 - GFF344 0.26 -0.9 348,427 - GFF344 0.26 -0.2 348,486 - GFF344 0.28 -0.2 348,486 - GFF344 0.28 -0.0 348,486 - GFF344 0.28 +0.7 348,486 - GFF344 0.28 +0.4 348,521 - GFF344 0.30 +0.8
Or see this region's nucleotide sequence