Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3415 and GFF3416 are separated by 11 nucleotides GFF3416 and GFF3417 overlap by 20 nucleotides GFF3417 and GFF3418 are separated by 0 nucleotides
GFF3415 - hypothetical protein, at 260,443 to 261,576
GFF3415
GFF3416 - Oligopeptide transport ATP-binding protein OppF, at 261,588 to 262,538
GFF3416
GFF3417 - Oligopeptide transport ATP-binding protein OppD, at 262,519 to 263,535
GFF3417
GFF3418 - hypothetical protein, at 263,536 to 264,576
GFF3418
Position (kb) 262
263
264 Strain fitness (log2 ratio) -1
0
1 at 261.521 kb on + strand at 261.818 kb on + strand, within GFF3416 at 261.877 kb on + strand, within GFF3416 at 261.877 kb on + strand, within GFF3416 at 261.878 kb on - strand, within GFF3416 at 261.878 kb on - strand, within GFF3416 at 261.905 kb on - strand, within GFF3416 at 261.941 kb on - strand, within GFF3416 at 261.941 kb on - strand, within GFF3416 at 261.941 kb on - strand, within GFF3416 at 262.111 kb on + strand, within GFF3416 at 262.294 kb on + strand, within GFF3416 at 262.294 kb on + strand, within GFF3416 at 262.294 kb on + strand, within GFF3416 at 262.295 kb on - strand, within GFF3416 at 262.732 kb on - strand, within GFF3417 at 262.734 kb on - strand, within GFF3417 at 262.847 kb on + strand, within GFF3417 at 262.847 kb on + strand, within GFF3417 at 262.847 kb on + strand, within GFF3417 at 262.847 kb on + strand, within GFF3417 at 262.848 kb on - strand, within GFF3417 at 262.848 kb on - strand, within GFF3417 at 262.848 kb on - strand, within GFF3417 at 262.848 kb on - strand, within GFF3417 at 263.081 kb on + strand, within GFF3417 at 263.081 kb on + strand, within GFF3417 at 263.081 kb on + strand, within GFF3417 at 263.645 kb on + strand, within GFF3418
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 261,521 + +0.1 261,818 + GFF3416 0.24 +0.5 261,877 + GFF3416 0.30 -0.6 261,877 + GFF3416 0.30 +0.3 261,878 - GFF3416 0.30 -0.8 261,878 - GFF3416 0.30 -0.4 261,905 - GFF3416 0.33 +0.4 261,941 - GFF3416 0.37 -0.0 261,941 - GFF3416 0.37 -0.6 261,941 - GFF3416 0.37 -0.2 262,111 + GFF3416 0.55 -0.6 262,294 + GFF3416 0.74 +0.4 262,294 + GFF3416 0.74 +0.4 262,294 + GFF3416 0.74 -0.2 262,295 - GFF3416 0.74 -0.6 262,732 - GFF3417 0.21 -1.3 262,734 - GFF3417 0.21 +0.2 262,847 + GFF3417 0.32 +0.1 262,847 + GFF3417 0.32 +0.1 262,847 + GFF3417 0.32 +1.1 262,847 + GFF3417 0.32 +1.0 262,848 - GFF3417 0.32 +0.9 262,848 - GFF3417 0.32 +0.5 262,848 - GFF3417 0.32 +0.6 262,848 - GFF3417 0.32 +0.2 263,081 + GFF3417 0.55 -0.2 263,081 + GFF3417 0.55 -1.5 263,081 + GFF3417 0.55 +0.3 263,645 + GFF3418 0.10 -0.0
Or see this region's nucleotide sequence