Strain Fitness in Xanthobacter sp. DMC5 around GFF3366

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3364 and GFF3365 are separated by 45 nucleotidesGFF3365 and GFF3366 overlap by 4 nucleotidesGFF3366 and GFF3367 are separated by 35 nucleotidesGFF3367 and GFF3368 are separated by 46 nucleotides GFF3364 - Ureidoglycolate lyase, at 209,264 to 210,109 GFF3364 GFF3365 - Levodione reductase, at 210,155 to 210,892 GFF3365 GFF3366 - hypothetical protein, at 210,889 to 212,151 GFF3366 GFF3367 - hypothetical protein, at 212,187 to 212,951 GFF3367 GFF3368 - L-lactate dehydrogenase, at 212,998 to 214,188 GFF3368 Position (kb) 210 211 212 213Strain fitness (log2 ratio) -2 -1 0 1at 209.910 kb on + strand, within GFF3364at 209.911 kb on - strand, within GFF3364at 209.911 kb on - strand, within GFF3364at 209.997 kb on - strand, within GFF3364at 209.997 kb on - strand, within GFF3364at 210.011 kb on + strand, within GFF3364at 210.011 kb on + strand, within GFF3364at 210.011 kb on + strand, within GFF3364at 210.109 kb on + strandat 210.110 kb on - strandat 210.110 kb on - strandat 210.265 kb on - strand, within GFF3365at 210.442 kb on - strand, within GFF3365at 210.487 kb on + strand, within GFF3365at 210.488 kb on - strand, within GFF3365at 210.639 kb on + strand, within GFF3365at 210.968 kb on + strandat 210.969 kb on - strandat 211.022 kb on + strand, within GFF3366at 211.035 kb on + strand, within GFF3366at 211.036 kb on - strand, within GFF3366at 211.036 kb on - strand, within GFF3366at 211.036 kb on - strand, within GFF3366at 211.157 kb on + strand, within GFF3366at 211.157 kb on + strand, within GFF3366at 211.158 kb on - strand, within GFF3366at 211.175 kb on + strand, within GFF3366at 211.175 kb on + strand, within GFF3366at 211.176 kb on - strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.583 kb on + strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.667 kb on + strand, within GFF3366at 211.668 kb on - strand, within GFF3366at 211.668 kb on - strand, within GFF3366at 211.683 kb on + strand, within GFF3366at 211.683 kb on + strand, within GFF3366at 211.891 kb on + strand, within GFF3366at 211.891 kb on + strand, within GFF3366at 211.892 kb on - strand, within GFF3366at 211.947 kb on + strand, within GFF3366at 211.948 kb on - strand, within GFF3366at 211.982 kb on + strand, within GFF3366at 211.982 kb on + strand, within GFF3366at 212.154 kb on + strandat 212.154 kb on + strandat 212.154 kb on + strandat 212.154 kb on + strandat 212.154 kb on + strandat 212.155 kb on - strandat 212.155 kb on - strandat 212.155 kb on - strandat 212.155 kb on - strandat 212.243 kb on - strandat 212.243 kb on - strandat 212.243 kb on - strandat 212.243 kb on - strandat 212.357 kb on - strand, within GFF3367at 212.357 kb on - strand, within GFF3367at 212.377 kb on + strand, within GFF3367at 212.377 kb on + strand, within GFF3367at 212.378 kb on - strand, within GFF3367at 212.392 kb on + strand, within GFF3367at 212.392 kb on + strand, within GFF3367at 212.392 kb on + strand, within GFF3367at 212.392 kb on + strand, within GFF3367at 212.602 kb on + strand, within GFF3367at 212.603 kb on - strand, within GFF3367at 212.650 kb on + strand, within GFF3367at 212.650 kb on + strand, within GFF3367at 212.650 kb on + strand, within GFF3367at 212.656 kb on + strand, within GFF3367at 212.656 kb on + strand, within GFF3367at 212.656 kb on + strand, within GFF3367at 212.656 kb on + strand, within GFF3367at 212.656 kb on + strand, within GFF3367at 212.657 kb on - strand, within GFF3367at 212.657 kb on - strand, within GFF3367at 212.657 kb on - strand, within GFF3367at 212.657 kb on - strand, within GFF3367at 212.657 kb on - strand, within GFF3367at 212.686 kb on + strand, within GFF3367at 212.902 kb on + strandat 212.903 kb on - strandat 212.903 kb on - strandat 212.939 kb on - strandat 213.035 kb on + strandat 213.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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209,910 + GFF3364 0.76 -0.3
209,911 - GFF3364 0.76 -0.5
209,911 - GFF3364 0.76 +0.5
209,997 - GFF3364 0.87 -0.2
209,997 - GFF3364 0.87 -0.4
210,011 + GFF3364 0.88 -0.5
210,011 + GFF3364 0.88 -1.1
210,011 + GFF3364 0.88 -0.3
210,109 + -0.1
210,110 - +1.0
210,110 - +0.5
210,265 - GFF3365 0.15 -0.5
210,442 - GFF3365 0.39 -0.2
210,487 + GFF3365 0.45 -0.0
210,488 - GFF3365 0.45 -0.8
210,639 + GFF3365 0.66 +0.2
210,968 + +0.8
210,969 - -0.8
211,022 + GFF3366 0.11 +0.5
211,035 + GFF3366 0.12 +1.0
211,036 - GFF3366 0.12 -1.5
211,036 - GFF3366 0.12 -0.8
211,036 - GFF3366 0.12 +0.5
211,157 + GFF3366 0.21 +0.1
211,157 + GFF3366 0.21 +0.2
211,158 - GFF3366 0.21 +0.8
211,175 + GFF3366 0.23 +0.3
211,175 + GFF3366 0.23 +0.8
211,176 - GFF3366 0.23 -0.2
211,334 + GFF3366 0.35 +0.6
211,334 + GFF3366 0.35 -0.1
211,334 + GFF3366 0.35 +0.6
211,334 + GFF3366 0.35 +0.1
211,334 + GFF3366 0.35 -0.7
211,334 + GFF3366 0.35 -0.3
211,335 - GFF3366 0.35 -0.2
211,335 - GFF3366 0.35 +0.2
211,335 - GFF3366 0.35 +0.7
211,335 - GFF3366 0.35 +0.0
211,335 - GFF3366 0.35 +0.7
211,583 + GFF3366 0.55 +0.1
211,659 - GFF3366 0.61 -0.7
211,659 - GFF3366 0.61 +0.4
211,659 - GFF3366 0.61 -0.0
211,659 - GFF3366 0.61 -0.2
211,659 - GFF3366 0.61 +0.4
211,667 + GFF3366 0.62 -0.3
211,668 - GFF3366 0.62 -0.4
211,668 - GFF3366 0.62 +0.4
211,683 + GFF3366 0.63 +0.3
211,683 + GFF3366 0.63 -0.6
211,891 + GFF3366 0.79 +0.3
211,891 + GFF3366 0.79 +0.3
211,892 - GFF3366 0.79 +0.1
211,947 + GFF3366 0.84 -0.9
211,948 - GFF3366 0.84 -0.5
211,982 + GFF3366 0.87 -2.0
211,982 + GFF3366 0.87 -0.0
212,154 + +0.1
212,154 + -0.5
212,154 + +0.0
212,154 + -0.6
212,154 + +1.5
212,155 - -1.0
212,155 - -0.5
212,155 - +0.1
212,155 - -0.1
212,243 - -0.5
212,243 - -0.0
212,243 - +0.0
212,243 - -1.6
212,357 - GFF3367 0.22 -0.2
212,357 - GFF3367 0.22 -0.1
212,377 + GFF3367 0.25 -0.6
212,377 + GFF3367 0.25 +1.0
212,378 - GFF3367 0.25 +0.3
212,392 + GFF3367 0.27 -0.6
212,392 + GFF3367 0.27 -0.2
212,392 + GFF3367 0.27 -0.2
212,392 + GFF3367 0.27 +1.3
212,602 + GFF3367 0.54 -0.6
212,603 - GFF3367 0.54 -0.5
212,650 + GFF3367 0.61 -0.5
212,650 + GFF3367 0.61 -0.2
212,650 + GFF3367 0.61 -0.3
212,656 + GFF3367 0.61 +0.2
212,656 + GFF3367 0.61 +0.2
212,656 + GFF3367 0.61 -0.1
212,656 + GFF3367 0.61 +0.2
212,656 + GFF3367 0.61 -0.3
212,657 - GFF3367 0.61 +0.3
212,657 - GFF3367 0.61 +0.4
212,657 - GFF3367 0.61 +0.3
212,657 - GFF3367 0.61 -0.3
212,657 - GFF3367 0.61 -0.5
212,686 + GFF3367 0.65 -0.3
212,902 + -0.6
212,903 - +0.1
212,903 - -0.6
212,939 - -0.2
213,035 + -0.7
213,050 - -0.9

Or see this region's nucleotide sequence