Strain Fitness in Xanthobacter sp. DMC5 around GFF3364

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3363 and GFF3364 are separated by 220 nucleotidesGFF3364 and GFF3365 are separated by 45 nucleotidesGFF3365 and GFF3366 overlap by 4 nucleotides GFF3363 - HTH-type transcriptional regulator DmlR, at 208,126 to 209,043 GFF3363 GFF3364 - Ureidoglycolate lyase, at 209,264 to 210,109 GFF3364 GFF3365 - Levodione reductase, at 210,155 to 210,892 GFF3365 GFF3366 - hypothetical protein, at 210,889 to 212,151 GFF3366 Position (kb) 209 210 211Strain fitness (log2 ratio) -2 -1 0 1at 208.352 kb on - strand, within GFF3363at 208.376 kb on + strand, within GFF3363at 208.533 kb on - strand, within GFF3363at 208.562 kb on + strand, within GFF3363at 208.563 kb on - strand, within GFF3363at 208.628 kb on + strand, within GFF3363at 208.629 kb on - strand, within GFF3363at 208.691 kb on + strand, within GFF3363at 208.727 kb on + strand, within GFF3363at 208.727 kb on + strand, within GFF3363at 208.727 kb on + strand, within GFF3363at 208.728 kb on - strand, within GFF3363at 208.728 kb on - strand, within GFF3363at 208.728 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.742 kb on + strand, within GFF3363at 208.742 kb on + strand, within GFF3363at 208.742 kb on + strand, within GFF3363at 208.743 kb on - strand, within GFF3363at 208.817 kb on + strand, within GFF3363at 208.818 kb on - strand, within GFF3363at 209.058 kb on + strandat 209.075 kb on + strandat 209.269 kb on + strandat 209.269 kb on + strandat 209.270 kb on - strandat 209.270 kb on - strandat 209.270 kb on - strandat 209.424 kb on + strand, within GFF3364at 209.425 kb on - strand, within GFF3364at 209.436 kb on + strand, within GFF3364at 209.642 kb on + strand, within GFF3364at 209.642 kb on + strand, within GFF3364at 209.643 kb on - strand, within GFF3364at 209.872 kb on - strand, within GFF3364at 209.910 kb on + strand, within GFF3364at 209.911 kb on - strand, within GFF3364at 209.911 kb on - strand, within GFF3364at 209.997 kb on - strand, within GFF3364at 209.997 kb on - strand, within GFF3364at 210.011 kb on + strand, within GFF3364at 210.011 kb on + strand, within GFF3364at 210.011 kb on + strand, within GFF3364at 210.109 kb on + strandat 210.110 kb on - strandat 210.110 kb on - strandat 210.265 kb on - strand, within GFF3365at 210.442 kb on - strand, within GFF3365at 210.487 kb on + strand, within GFF3365at 210.488 kb on - strand, within GFF3365at 210.639 kb on + strand, within GFF3365at 210.968 kb on + strandat 210.969 kb on - strandat 211.022 kb on + strand, within GFF3366at 211.035 kb on + strand, within GFF3366at 211.036 kb on - strand, within GFF3366at 211.036 kb on - strand, within GFF3366at 211.036 kb on - strand, within GFF3366

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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208,352 - GFF3363 0.25 -0.5
208,376 + GFF3363 0.27 -2.0
208,533 - GFF3363 0.44 +0.2
208,562 + GFF3363 0.47 +0.1
208,563 - GFF3363 0.48 +0.9
208,628 + GFF3363 0.55 -0.2
208,629 - GFF3363 0.55 -0.4
208,691 + GFF3363 0.62 -0.3
208,727 + GFF3363 0.65 -0.4
208,727 + GFF3363 0.65 -0.2
208,727 + GFF3363 0.65 -0.5
208,728 - GFF3363 0.66 -0.3
208,728 - GFF3363 0.66 +0.1
208,728 - GFF3363 0.66 -0.1
208,741 - GFF3363 0.67 -0.5
208,741 - GFF3363 0.67 +1.5
208,741 - GFF3363 0.67 -0.0
208,741 - GFF3363 0.67 +0.3
208,741 - GFF3363 0.67 -0.5
208,741 - GFF3363 0.67 -2.0
208,741 - GFF3363 0.67 +0.5
208,742 + GFF3363 0.67 +0.7
208,742 + GFF3363 0.67 +0.5
208,742 + GFF3363 0.67 -0.0
208,743 - GFF3363 0.67 -0.3
208,817 + GFF3363 0.75 -0.1
208,818 - GFF3363 0.75 -0.2
209,058 + -0.1
209,075 + -0.2
209,269 + -0.3
209,269 + -0.1
209,270 - -0.8
209,270 - +1.0
209,270 - -1.3
209,424 + GFF3364 0.19 -2.1
209,425 - GFF3364 0.19 -1.2
209,436 + GFF3364 0.20 +0.1
209,642 + GFF3364 0.45 -1.5
209,642 + GFF3364 0.45 -0.3
209,643 - GFF3364 0.45 -0.6
209,872 - GFF3364 0.72 +0.2
209,910 + GFF3364 0.76 -0.3
209,911 - GFF3364 0.76 -0.5
209,911 - GFF3364 0.76 +0.5
209,997 - GFF3364 0.87 -0.2
209,997 - GFF3364 0.87 -0.4
210,011 + GFF3364 0.88 -0.5
210,011 + GFF3364 0.88 -1.1
210,011 + GFF3364 0.88 -0.3
210,109 + -0.1
210,110 - +1.0
210,110 - +0.5
210,265 - GFF3365 0.15 -0.5
210,442 - GFF3365 0.39 -0.2
210,487 + GFF3365 0.45 -0.0
210,488 - GFF3365 0.45 -0.8
210,639 + GFF3365 0.66 +0.2
210,968 + +0.8
210,969 - -0.8
211,022 + GFF3366 0.11 +0.5
211,035 + GFF3366 0.12 +1.0
211,036 - GFF3366 0.12 -1.5
211,036 - GFF3366 0.12 -0.8
211,036 - GFF3366 0.12 +0.5

Or see this region's nucleotide sequence