Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3363 and GFF3364 are separated by 220 nucleotides GFF3364 and GFF3365 are separated by 45 nucleotides GFF3365 and GFF3366 overlap by 4 nucleotides
GFF3363 - HTH-type transcriptional regulator DmlR, at 208,126 to 209,043
GFF3363
GFF3364 - Ureidoglycolate lyase, at 209,264 to 210,109
GFF3364
GFF3365 - Levodione reductase, at 210,155 to 210,892
GFF3365
GFF3366 - hypothetical protein, at 210,889 to 212,151
GFF3366
Position (kb)
209
210
211 Strain fitness (log2 ratio)
-2
-1
0
1 at 208.352 kb on - strand, within GFF3363 at 208.376 kb on + strand, within GFF3363 at 208.533 kb on - strand, within GFF3363 at 208.562 kb on + strand, within GFF3363 at 208.563 kb on - strand, within GFF3363 at 208.628 kb on + strand, within GFF3363 at 208.629 kb on - strand, within GFF3363 at 208.691 kb on + strand, within GFF3363 at 208.727 kb on + strand, within GFF3363 at 208.727 kb on + strand, within GFF3363 at 208.727 kb on + strand, within GFF3363 at 208.728 kb on - strand, within GFF3363 at 208.728 kb on - strand, within GFF3363 at 208.728 kb on - strand, within GFF3363 at 208.741 kb on - strand, within GFF3363 at 208.741 kb on - strand, within GFF3363 at 208.741 kb on - strand, within GFF3363 at 208.741 kb on - strand, within GFF3363 at 208.741 kb on - strand, within GFF3363 at 208.741 kb on - strand, within GFF3363 at 208.741 kb on - strand, within GFF3363 at 208.742 kb on + strand, within GFF3363 at 208.742 kb on + strand, within GFF3363 at 208.742 kb on + strand, within GFF3363 at 208.743 kb on - strand, within GFF3363 at 208.817 kb on + strand, within GFF3363 at 208.818 kb on - strand, within GFF3363 at 209.058 kb on + strand at 209.075 kb on + strand at 209.269 kb on + strand at 209.269 kb on + strand at 209.270 kb on - strand at 209.270 kb on - strand at 209.270 kb on - strand at 209.424 kb on + strand, within GFF3364 at 209.425 kb on - strand, within GFF3364 at 209.436 kb on + strand, within GFF3364 at 209.642 kb on + strand, within GFF3364 at 209.642 kb on + strand, within GFF3364 at 209.643 kb on - strand, within GFF3364 at 209.872 kb on - strand, within GFF3364 at 209.910 kb on + strand, within GFF3364 at 209.911 kb on - strand, within GFF3364 at 209.911 kb on - strand, within GFF3364 at 209.997 kb on - strand, within GFF3364 at 209.997 kb on - strand, within GFF3364 at 210.011 kb on + strand, within GFF3364 at 210.011 kb on + strand, within GFF3364 at 210.011 kb on + strand, within GFF3364 at 210.109 kb on + strand at 210.110 kb on - strand at 210.110 kb on - strand at 210.265 kb on - strand, within GFF3365 at 210.442 kb on - strand, within GFF3365 at 210.487 kb on + strand, within GFF3365 at 210.488 kb on - strand, within GFF3365 at 210.639 kb on + strand, within GFF3365 at 210.968 kb on + strand at 210.969 kb on - strand at 211.022 kb on + strand, within GFF3366 at 211.035 kb on + strand, within GFF3366 at 211.036 kb on - strand, within GFF3366 at 211.036 kb on - strand, within GFF3366 at 211.036 kb on - strand, within GFF3366
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 208,352 - GFF3363 0.25 -0.5 208,376 + GFF3363 0.27 -2.0 208,533 - GFF3363 0.44 +0.2 208,562 + GFF3363 0.47 +0.1 208,563 - GFF3363 0.48 +0.9 208,628 + GFF3363 0.55 -0.2 208,629 - GFF3363 0.55 -0.4 208,691 + GFF3363 0.62 -0.3 208,727 + GFF3363 0.65 -0.4 208,727 + GFF3363 0.65 -0.2 208,727 + GFF3363 0.65 -0.5 208,728 - GFF3363 0.66 -0.3 208,728 - GFF3363 0.66 +0.1 208,728 - GFF3363 0.66 -0.1 208,741 - GFF3363 0.67 -0.5 208,741 - GFF3363 0.67 +1.5 208,741 - GFF3363 0.67 -0.0 208,741 - GFF3363 0.67 +0.3 208,741 - GFF3363 0.67 -0.5 208,741 - GFF3363 0.67 -2.0 208,741 - GFF3363 0.67 +0.5 208,742 + GFF3363 0.67 +0.7 208,742 + GFF3363 0.67 +0.5 208,742 + GFF3363 0.67 -0.0 208,743 - GFF3363 0.67 -0.3 208,817 + GFF3363 0.75 -0.1 208,818 - GFF3363 0.75 -0.2 209,058 + -0.1 209,075 + -0.2 209,269 + -0.3 209,269 + -0.1 209,270 - -0.8 209,270 - +1.0 209,270 - -1.3 209,424 + GFF3364 0.19 -2.1 209,425 - GFF3364 0.19 -1.2 209,436 + GFF3364 0.20 +0.1 209,642 + GFF3364 0.45 -1.5 209,642 + GFF3364 0.45 -0.3 209,643 - GFF3364 0.45 -0.6 209,872 - GFF3364 0.72 +0.2 209,910 + GFF3364 0.76 -0.3 209,911 - GFF3364 0.76 -0.5 209,911 - GFF3364 0.76 +0.5 209,997 - GFF3364 0.87 -0.2 209,997 - GFF3364 0.87 -0.4 210,011 + GFF3364 0.88 -0.5 210,011 + GFF3364 0.88 -1.1 210,011 + GFF3364 0.88 -0.3 210,109 + -0.1 210,110 - +1.0 210,110 - +0.5 210,265 - GFF3365 0.15 -0.5 210,442 - GFF3365 0.39 -0.2 210,487 + GFF3365 0.45 -0.0 210,488 - GFF3365 0.45 -0.8 210,639 + GFF3365 0.66 +0.2 210,968 + +0.8 210,969 - -0.8 211,022 + GFF3366 0.11 +0.5 211,035 + GFF3366 0.12 +1.0 211,036 - GFF3366 0.12 -1.5 211,036 - GFF3366 0.12 -0.8 211,036 - GFF3366 0.12 +0.5
Or see this region's nucleotide sequence