Strain Fitness in Xanthobacter sp. DMC5 around GFF3359

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3358 and GFF3359 are separated by 19 nucleotidesGFF3359 and GFF3360 are separated by 30 nucleotides GFF3358 - putative protein YisK, at 201,951 to 202,952 GFF3358 GFF3359 - hypothetical protein, at 202,972 to 204,159 GFF3359 GFF3360 - Acetophenone carboxylase delta subunit, at 204,190 to 205,971 GFF3360 Position (kb) 202 203 204 205Strain fitness (log2 ratio) -2 -1 0 1at 202.141 kb on + strand, within GFF3358at 202.141 kb on + strand, within GFF3358at 202.141 kb on + strand, within GFF3358at 202.142 kb on - strand, within GFF3358at 202.260 kb on + strand, within GFF3358at 202.378 kb on + strand, within GFF3358at 202.378 kb on + strand, within GFF3358at 202.378 kb on + strand, within GFF3358at 202.534 kb on + strand, within GFF3358at 202.534 kb on + strand, within GFF3358at 202.534 kb on + strand, within GFF3358at 202.534 kb on + strand, within GFF3358at 202.535 kb on - strand, within GFF3358at 202.535 kb on - strand, within GFF3358at 202.535 kb on - strand, within GFF3358at 202.537 kb on + strand, within GFF3358at 202.537 kb on + strand, within GFF3358at 202.538 kb on - strand, within GFF3358at 202.538 kb on - strand, within GFF3358at 202.870 kb on + strandat 202.871 kb on - strandat 202.871 kb on - strandat 202.936 kb on + strandat 202.936 kb on + strandat 202.936 kb on + strandat 202.936 kb on + strandat 202.937 kb on - strandat 202.937 kb on - strandat 202.937 kb on - strandat 202.937 kb on - strandat 203.051 kb on + strandat 203.052 kb on - strandat 203.052 kb on - strandat 203.102 kb on + strand, within GFF3359at 203.102 kb on + strand, within GFF3359at 203.103 kb on - strand, within GFF3359at 203.105 kb on + strand, within GFF3359at 203.105 kb on + strand, within GFF3359at 203.105 kb on + strand, within GFF3359at 203.106 kb on - strand, within GFF3359at 203.106 kb on - strand, within GFF3359at 203.106 kb on - strand, within GFF3359at 203.106 kb on - strand, within GFF3359at 203.250 kb on + strand, within GFF3359at 203.250 kb on + strand, within GFF3359at 203.251 kb on - strand, within GFF3359at 203.251 kb on - strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.252 kb on + strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.253 kb on - strand, within GFF3359at 203.283 kb on - strand, within GFF3359at 203.342 kb on + strand, within GFF3359at 203.342 kb on + strand, within GFF3359at 203.342 kb on + strand, within GFF3359at 203.343 kb on - strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.360 kb on + strand, within GFF3359at 203.361 kb on - strand, within GFF3359at 203.361 kb on - strand, within GFF3359at 203.663 kb on - strand, within GFF3359at 203.669 kb on + strand, within GFF3359at 203.726 kb on + strand, within GFF3359at 204.267 kb on - strandat 204.267 kb on - strandat 204.296 kb on + strandat 204.297 kb on - strandat 204.297 kb on - strandat 204.380 kb on + strand, within GFF3360at 204.381 kb on - strand, within GFF3360at 204.558 kb on - strand, within GFF3360at 204.558 kb on - strand, within GFF3360at 204.565 kb on - strand, within GFF3360at 204.773 kb on - strand, within GFF3360at 204.818 kb on + strand, within GFF3360at 204.818 kb on + strand, within GFF3360at 204.818 kb on + strand, within GFF3360at 204.819 kb on - strand, within GFF3360at 204.920 kb on - strand, within GFF3360at 204.920 kb on - strand, within GFF3360at 205.022 kb on + strand, within GFF3360at 205.022 kb on + strand, within GFF3360at 205.023 kb on - strand, within GFF3360at 205.023 kb on - strand, within GFF3360at 205.023 kb on - strand, within GFF3360

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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202,141 + GFF3358 0.19 -0.3
202,141 + GFF3358 0.19 -0.3
202,141 + GFF3358 0.19 +0.4
202,142 - GFF3358 0.19 +0.3
202,260 + GFF3358 0.31 -0.0
202,378 + GFF3358 0.43 -0.5
202,378 + GFF3358 0.43 +1.3
202,378 + GFF3358 0.43 +0.9
202,534 + GFF3358 0.58 +0.3
202,534 + GFF3358 0.58 -0.3
202,534 + GFF3358 0.58 +0.2
202,534 + GFF3358 0.58 +1.1
202,535 - GFF3358 0.58 -0.7
202,535 - GFF3358 0.58 +0.3
202,535 - GFF3358 0.58 -0.2
202,537 + GFF3358 0.58 +0.1
202,537 + GFF3358 0.58 -0.5
202,538 - GFF3358 0.59 -0.5
202,538 - GFF3358 0.59 +0.9
202,870 + +1.1
202,871 - -0.9
202,871 - +0.3
202,936 + -0.1
202,936 + -1.0
202,936 + +0.2
202,936 + +1.4
202,937 - +0.2
202,937 - -0.5
202,937 - -0.5
202,937 - -0.5
203,051 + -0.1
203,052 - -0.4
203,052 - -1.0
203,102 + GFF3359 0.11 +0.1
203,102 + GFF3359 0.11 -0.3
203,103 - GFF3359 0.11 -1.3
203,105 + GFF3359 0.11 +0.2
203,105 + GFF3359 0.11 +0.4
203,105 + GFF3359 0.11 +0.1
203,106 - GFF3359 0.11 -0.7
203,106 - GFF3359 0.11 -0.9
203,106 - GFF3359 0.11 -0.1
203,106 - GFF3359 0.11 -0.5
203,250 + GFF3359 0.23 +1.0
203,250 + GFF3359 0.23 +1.3
203,251 - GFF3359 0.23 +0.2
203,251 - GFF3359 0.23 +0.2
203,252 + GFF3359 0.24 -0.3
203,252 + GFF3359 0.24 -0.2
203,252 + GFF3359 0.24 -0.4
203,252 + GFF3359 0.24 +0.2
203,252 + GFF3359 0.24 -0.2
203,253 - GFF3359 0.24 +0.8
203,253 - GFF3359 0.24 -0.5
203,253 - GFF3359 0.24 -1.5
203,253 - GFF3359 0.24 -0.5
203,283 - GFF3359 0.26 -0.2
203,342 + GFF3359 0.31 -0.1
203,342 + GFF3359 0.31 -0.0
203,342 + GFF3359 0.31 +0.4
203,343 - GFF3359 0.31 -0.1
203,360 + GFF3359 0.33 -1.2
203,360 + GFF3359 0.33 -0.1
203,360 + GFF3359 0.33 -0.1
203,360 + GFF3359 0.33 -2.0
203,360 + GFF3359 0.33 -0.0
203,361 - GFF3359 0.33 -0.5
203,361 - GFF3359 0.33 +0.2
203,663 - GFF3359 0.58 -0.1
203,669 + GFF3359 0.59 -1.2
203,726 + GFF3359 0.63 +0.2
204,267 - -0.6
204,267 - -1.6
204,296 + +0.1
204,297 - +0.5
204,297 - +0.0
204,380 + GFF3360 0.11 +0.7
204,381 - GFF3360 0.11 +0.9
204,558 - GFF3360 0.21 +0.2
204,558 - GFF3360 0.21 -1.9
204,565 - GFF3360 0.21 +0.7
204,773 - GFF3360 0.33 -0.4
204,818 + GFF3360 0.35 -0.8
204,818 + GFF3360 0.35 +1.2
204,818 + GFF3360 0.35 +0.4
204,819 - GFF3360 0.35 +0.9
204,920 - GFF3360 0.41 -0.4
204,920 - GFF3360 0.41 -0.2
205,022 + GFF3360 0.47 -0.2
205,022 + GFF3360 0.47 -0.5
205,023 - GFF3360 0.47 +0.6
205,023 - GFF3360 0.47 -0.3
205,023 - GFF3360 0.47 +0.0

Or see this region's nucleotide sequence