Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3354 and GFF3355 are separated by 148 nucleotides GFF3355 and GFF3356 overlap by 1 nucleotides GFF3356 and GFF3357 are separated by 75 nucleotides
GFF3354 - hypothetical protein, at 197,564 to 198,790
GFF3354
GFF3355 - Nitrilotriacetate monooxygenase component A, at 198,939 to 200,258
GFF3355
GFF3356 - Flavin reductase (NADH), at 200,258 to 200,776
GFF3356
GFF3357 - Citrate lyase subunit beta, at 200,852 to 201,793
GFF3357
Position (kb) 198
199
200
201 Strain fitness (log2 ratio) -1
0
1 at 198.188 kb on + strand, within GFF3354 at 198.188 kb on + strand, within GFF3354 at 198.188 kb on + strand, within GFF3354 at 198.305 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.407 kb on + strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.408 kb on - strand, within GFF3354 at 198.447 kb on - strand, within GFF3354 at 198.447 kb on - strand, within GFF3354 at 198.784 kb on + strand at 198.784 kb on + strand at 198.784 kb on + strand at 198.784 kb on + strand at 198.784 kb on + strand at 198.785 kb on - strand at 198.785 kb on - strand at 199.050 kb on + strand at 199.050 kb on + strand at 199.051 kb on - strand at 199.051 kb on - strand at 199.192 kb on + strand, within GFF3355 at 199.263 kb on + strand, within GFF3355 at 199.263 kb on + strand, within GFF3355 at 199.263 kb on + strand, within GFF3355 at 199.275 kb on + strand, within GFF3355 at 199.276 kb on - strand, within GFF3355 at 199.411 kb on - strand, within GFF3355 at 199.503 kb on + strand, within GFF3355 at 199.503 kb on + strand, within GFF3355 at 199.503 kb on + strand, within GFF3355 at 199.503 kb on + strand, within GFF3355 at 199.503 kb on + strand, within GFF3355 at 199.504 kb on - strand, within GFF3355 at 199.504 kb on - strand, within GFF3355 at 199.527 kb on + strand, within GFF3355 at 199.796 kb on + strand, within GFF3355 at 200.020 kb on - strand, within GFF3355 at 200.145 kb on - strand at 200.197 kb on - strand at 200.211 kb on + strand at 200.670 kb on + strand, within GFF3356 at 200.670 kb on + strand, within GFF3356 at 200.670 kb on + strand, within GFF3356 at 200.670 kb on + strand, within GFF3356 at 200.671 kb on - strand, within GFF3356 at 200.671 kb on - strand, within GFF3356 at 200.671 kb on - strand, within GFF3356 at 200.671 kb on - strand, within GFF3356
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 198,188 + GFF3354 0.51 +0.1 198,188 + GFF3354 0.51 -0.7 198,188 + GFF3354 0.51 -0.8 198,305 + GFF3354 0.60 +0.2 198,407 + GFF3354 0.69 -0.4 198,407 + GFF3354 0.69 +0.0 198,407 + GFF3354 0.69 +1.0 198,407 + GFF3354 0.69 -0.8 198,407 + GFF3354 0.69 +0.9 198,408 - GFF3354 0.69 +0.1 198,408 - GFF3354 0.69 +0.3 198,408 - GFF3354 0.69 -0.3 198,408 - GFF3354 0.69 -0.5 198,447 - GFF3354 0.72 +0.7 198,447 - GFF3354 0.72 +0.3 198,784 + +0.3 198,784 + -1.1 198,784 + -0.2 198,784 + -0.3 198,784 + +0.1 198,785 - +0.6 198,785 - -0.9 199,050 + +0.1 199,050 + +0.2 199,051 - +0.5 199,051 - +0.2 199,192 + GFF3355 0.19 +1.1 199,263 + GFF3355 0.25 +0.6 199,263 + GFF3355 0.25 -1.2 199,263 + GFF3355 0.25 -0.1 199,275 + GFF3355 0.25 -0.7 199,276 - GFF3355 0.26 -0.2 199,411 - GFF3355 0.36 +0.2 199,503 + GFF3355 0.43 -0.2 199,503 + GFF3355 0.43 -0.6 199,503 + GFF3355 0.43 +0.4 199,503 + GFF3355 0.43 +0.6 199,503 + GFF3355 0.43 +0.6 199,504 - GFF3355 0.43 +0.0 199,504 - GFF3355 0.43 +0.6 199,527 + GFF3355 0.45 -0.2 199,796 + GFF3355 0.65 +0.0 200,020 - GFF3355 0.82 -0.3 200,145 - +0.2 200,197 - +0.7 200,211 + -0.4 200,670 + GFF3356 0.79 -0.5 200,670 + GFF3356 0.79 -0.5 200,670 + GFF3356 0.79 +0.9 200,670 + GFF3356 0.79 -0.1 200,671 - GFF3356 0.80 +0.1 200,671 - GFF3356 0.80 +0.5 200,671 - GFF3356 0.80 -0.6 200,671 - GFF3356 0.80 -0.1
Or see this region's nucleotide sequence