Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF334 and GFF335 are separated by 2 nucleotides GFF335 and GFF336 are separated by 33 nucleotides GFF336 and GFF337 are separated by 10 nucleotides GFF337 and GFF338 overlap by 59 nucleotides
GFF334 - hypothetical protein, at 342,109 to 343,536
GFF334
GFF335 - hypothetical protein, at 343,539 to 344,249
GFF335
GFF336 - hypothetical protein, at 344,283 to 344,540
GFF336
GFF337 - hypothetical protein, at 344,551 to 344,697
GFF337
GFF338 - hypothetical protein, at 344,639 to 345,292
GFF338
Position (kb) 343
344
345 Strain fitness (log2 ratio) -1
0
1
2 at 342.604 kb on + strand, within GFF334 at 342.714 kb on + strand, within GFF334 at 342.759 kb on + strand, within GFF334 at 343.130 kb on - strand, within GFF334 at 343.150 kb on + strand, within GFF334 at 343.150 kb on + strand, within GFF334 at 343.150 kb on + strand, within GFF334 at 343.150 kb on + strand, within GFF334 at 343.150 kb on + strand, within GFF334 at 343.151 kb on - strand, within GFF334 at 343.280 kb on - strand, within GFF334 at 343.283 kb on - strand, within GFF334 at 343.369 kb on + strand, within GFF334 at 343.369 kb on + strand, within GFF334 at 343.370 kb on - strand, within GFF334 at 343.370 kb on - strand, within GFF334 at 343.468 kb on + strand at 343.468 kb on + strand at 343.469 kb on - strand at 343.498 kb on + strand at 343.623 kb on + strand, within GFF335 at 343.623 kb on + strand, within GFF335 at 343.623 kb on + strand, within GFF335 at 343.650 kb on + strand, within GFF335 at 343.650 kb on + strand, within GFF335 at 343.650 kb on + strand, within GFF335 at 343.651 kb on - strand, within GFF335 at 343.651 kb on - strand, within GFF335 at 343.728 kb on + strand, within GFF335 at 343.728 kb on + strand, within GFF335 at 343.728 kb on + strand, within GFF335 at 343.728 kb on + strand, within GFF335 at 343.729 kb on - strand, within GFF335 at 343.729 kb on - strand, within GFF335 at 343.771 kb on + strand, within GFF335 at 343.804 kb on - strand, within GFF335 at 343.804 kb on - strand, within GFF335 at 343.920 kb on + strand, within GFF335 at 343.920 kb on + strand, within GFF335 at 343.920 kb on + strand, within GFF335 at 343.920 kb on + strand, within GFF335 at 343.920 kb on + strand, within GFF335 at 343.921 kb on - strand, within GFF335 at 343.921 kb on - strand, within GFF335 at 343.921 kb on - strand, within GFF335 at 343.921 kb on - strand, within GFF335 at 344.066 kb on + strand, within GFF335 at 344.067 kb on - strand, within GFF335 at 344.067 kb on - strand, within GFF335 at 344.140 kb on - strand, within GFF335 at 344.140 kb on - strand, within GFF335 at 344.375 kb on + strand, within GFF336 at 344.678 kb on - strand at 344.682 kb on + strand at 344.683 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 342,604 + GFF334 0.35 -0.0 342,714 + GFF334 0.42 -0.3 342,759 + GFF334 0.46 +0.2 343,130 - GFF334 0.71 +0.6 343,150 + GFF334 0.73 -0.2 343,150 + GFF334 0.73 +2.0 343,150 + GFF334 0.73 -0.0 343,150 + GFF334 0.73 +0.1 343,150 + GFF334 0.73 +0.5 343,151 - GFF334 0.73 +0.9 343,280 - GFF334 0.82 -1.2 343,283 - GFF334 0.82 -0.2 343,369 + GFF334 0.88 +0.6 343,369 + GFF334 0.88 +0.2 343,370 - GFF334 0.88 -0.3 343,370 - GFF334 0.88 -0.2 343,468 + +0.7 343,468 + +1.2 343,469 - -0.2 343,498 + +0.2 343,623 + GFF335 0.12 -0.5 343,623 + GFF335 0.12 +0.1 343,623 + GFF335 0.12 -0.9 343,650 + GFF335 0.16 +0.5 343,650 + GFF335 0.16 +0.3 343,650 + GFF335 0.16 +0.1 343,651 - GFF335 0.16 -0.0 343,651 - GFF335 0.16 -0.9 343,728 + GFF335 0.27 -0.5 343,728 + GFF335 0.27 +1.8 343,728 + GFF335 0.27 +0.1 343,728 + GFF335 0.27 +0.0 343,729 - GFF335 0.27 +0.4 343,729 - GFF335 0.27 -0.1 343,771 + GFF335 0.33 +0.6 343,804 - GFF335 0.37 +0.3 343,804 - GFF335 0.37 -0.9 343,920 + GFF335 0.54 +1.2 343,920 + GFF335 0.54 -0.0 343,920 + GFF335 0.54 +0.6 343,920 + GFF335 0.54 +0.7 343,920 + GFF335 0.54 +0.7 343,921 - GFF335 0.54 +0.1 343,921 - GFF335 0.54 -0.0 343,921 - GFF335 0.54 -0.2 343,921 - GFF335 0.54 -0.3 344,066 + GFF335 0.74 +1.3 344,067 - GFF335 0.74 +1.2 344,067 - GFF335 0.74 +1.3 344,140 - GFF335 0.85 +0.8 344,140 - GFF335 0.85 +0.3 344,375 + GFF336 0.36 +1.0 344,678 - -1.1 344,682 + +0.7 344,683 - -0.9
Or see this region's nucleotide sequence