Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3347 and GFF3348 are separated by 24 nucleotides GFF3348 and GFF3349 are separated by 117 nucleotides GFF3349 and GFF3350 overlap by 4 nucleotides
GFF3347 - Glucans biosynthesis glucosyltransferase H, at 190,453 to 192,576
GFF3347
GFF3348 - HTH-type transcriptional regulator GltC, at 192,601 to 193,482
GFF3348
GFF3349 - Lipopolysaccharide export system ATP-binding protein LptB, at 193,600 to 194,433
GFF3349
GFF3350 - Vitamin B12 import ATP-binding protein BtuD, at 194,430 to 195,188
GFF3350
Position (kb) 192
193
194 Strain fitness (log2 ratio) -1
0
1 at 191.677 kb on + strand, within GFF3347 at 191.677 kb on + strand, within GFF3347 at 191.677 kb on + strand, within GFF3347 at 191.678 kb on - strand, within GFF3347 at 191.678 kb on - strand, within GFF3347 at 191.678 kb on - strand, within GFF3347 at 191.758 kb on + strand, within GFF3347 at 191.758 kb on + strand, within GFF3347 at 191.758 kb on + strand, within GFF3347 at 192.001 kb on + strand, within GFF3347 at 192.001 kb on + strand, within GFF3347 at 192.001 kb on + strand, within GFF3347 at 192.001 kb on + strand, within GFF3347 at 192.002 kb on - strand, within GFF3347 at 192.688 kb on + strand at 192.887 kb on + strand, within GFF3348 at 193.166 kb on + strand, within GFF3348 at 193.167 kb on - strand, within GFF3348 at 193.167 kb on - strand, within GFF3348 at 193.709 kb on - strand, within GFF3349 at 194.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 191,677 + GFF3347 0.58 -0.1 191,677 + GFF3347 0.58 -0.3 191,677 + GFF3347 0.58 -0.6 191,678 - GFF3347 0.58 -0.3 191,678 - GFF3347 0.58 +0.5 191,678 - GFF3347 0.58 -0.0 191,758 + GFF3347 0.61 -0.9 191,758 + GFF3347 0.61 +0.5 191,758 + GFF3347 0.61 +0.8 192,001 + GFF3347 0.73 +0.3 192,001 + GFF3347 0.73 -0.1 192,001 + GFF3347 0.73 +0.1 192,001 + GFF3347 0.73 -0.7 192,002 - GFF3347 0.73 -0.1 192,688 + -0.2 192,887 + GFF3348 0.32 +0.2 193,166 + GFF3348 0.64 -0.4 193,167 - GFF3348 0.64 -0.9 193,167 - GFF3348 0.64 -0.5 193,709 - GFF3349 0.13 +0.3 194,414 - +1.3
Or see this region's nucleotide sequence