Strain Fitness in Xanthobacter sp. DMC5 around GFF334

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF332 and GFF333 overlap by 4 nucleotidesGFF333 and GFF334 are separated by 21 nucleotidesGFF334 and GFF335 are separated by 2 nucleotidesGFF335 and GFF336 are separated by 33 nucleotides GFF332 - hypothetical protein, at 337,919 to 341,665 GFF332 GFF333 - hypothetical protein, at 341,662 to 342,087 GFF333 GFF334 - hypothetical protein, at 342,109 to 343,536 GFF334 GFF335 - hypothetical protein, at 343,539 to 344,249 GFF335 GFF336 - hypothetical protein, at 344,283 to 344,540 GFF336 Position (kb) 342 343 344Strain fitness (log2 ratio) -2 -1 0 1 2at 341.206 kb on + strand, within GFF332at 341.207 kb on - strand, within GFF332at 341.260 kb on - strand, within GFF332at 341.260 kb on - strand, within GFF332at 341.381 kb on + strandat 341.381 kb on + strandat 341.382 kb on - strandat 341.420 kb on + strandat 341.456 kb on + strandat 341.484 kb on - strandat 341.484 kb on - strandat 341.495 kb on + strandat 341.495 kb on + strandat 341.569 kb on - strandat 341.809 kb on + strand, within GFF333at 341.809 kb on + strand, within GFF333at 341.809 kb on + strand, within GFF333at 341.809 kb on + strand, within GFF333at 341.810 kb on - strand, within GFF333at 341.810 kb on - strand, within GFF333at 341.810 kb on - strand, within GFF333at 341.810 kb on - strand, within GFF333at 341.894 kb on + strand, within GFF333at 342.127 kb on + strandat 342.128 kb on - strandat 342.128 kb on - strandat 342.128 kb on - strandat 342.128 kb on - strandat 342.267 kb on + strand, within GFF334at 342.267 kb on + strand, within GFF334at 342.268 kb on - strand, within GFF334at 342.287 kb on - strand, within GFF334at 342.287 kb on - strand, within GFF334at 342.287 kb on - strand, within GFF334at 342.322 kb on + strand, within GFF334at 342.322 kb on + strand, within GFF334at 342.322 kb on + strand, within GFF334at 342.323 kb on - strand, within GFF334at 342.323 kb on - strand, within GFF334at 342.334 kb on + strand, within GFF334at 342.364 kb on + strand, within GFF334at 342.365 kb on - strand, within GFF334at 342.365 kb on - strand, within GFF334at 342.365 kb on - strand, within GFF334at 342.426 kb on + strand, within GFF334at 342.427 kb on - strand, within GFF334at 342.427 kb on - strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.431 kb on - strand, within GFF334at 342.431 kb on - strand, within GFF334at 342.431 kb on - strand, within GFF334at 342.431 kb on - strand, within GFF334at 342.491 kb on - strand, within GFF334at 342.604 kb on + strand, within GFF334at 342.714 kb on + strand, within GFF334at 342.759 kb on + strand, within GFF334at 343.130 kb on - strand, within GFF334at 343.150 kb on + strand, within GFF334at 343.150 kb on + strand, within GFF334at 343.150 kb on + strand, within GFF334at 343.150 kb on + strand, within GFF334at 343.150 kb on + strand, within GFF334at 343.151 kb on - strand, within GFF334at 343.280 kb on - strand, within GFF334at 343.283 kb on - strand, within GFF334at 343.369 kb on + strand, within GFF334at 343.369 kb on + strand, within GFF334at 343.370 kb on - strand, within GFF334at 343.370 kb on - strand, within GFF334at 343.468 kb on + strandat 343.468 kb on + strandat 343.469 kb on - strandat 343.498 kb on + strandat 343.623 kb on + strand, within GFF335at 343.623 kb on + strand, within GFF335at 343.623 kb on + strand, within GFF335at 343.650 kb on + strand, within GFF335at 343.650 kb on + strand, within GFF335at 343.650 kb on + strand, within GFF335at 343.651 kb on - strand, within GFF335at 343.651 kb on - strand, within GFF335at 343.728 kb on + strand, within GFF335at 343.728 kb on + strand, within GFF335at 343.728 kb on + strand, within GFF335at 343.728 kb on + strand, within GFF335at 343.729 kb on - strand, within GFF335at 343.729 kb on - strand, within GFF335at 343.771 kb on + strand, within GFF335at 343.804 kb on - strand, within GFF335at 343.804 kb on - strand, within GFF335at 343.920 kb on + strand, within GFF335at 343.920 kb on + strand, within GFF335at 343.920 kb on + strand, within GFF335at 343.920 kb on + strand, within GFF335at 343.920 kb on + strand, within GFF335at 343.921 kb on - strand, within GFF335at 343.921 kb on - strand, within GFF335at 343.921 kb on - strand, within GFF335at 343.921 kb on - strand, within GFF335at 344.066 kb on + strand, within GFF335at 344.067 kb on - strand, within GFF335at 344.067 kb on - strand, within GFF335at 344.140 kb on - strand, within GFF335at 344.140 kb on - strand, within GFF335at 344.375 kb on + strand, within GFF336

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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341,206 + GFF332 0.88 -0.1
341,207 - GFF332 0.88 +0.2
341,260 - GFF332 0.89 -0.7
341,260 - GFF332 0.89 +0.7
341,381 + -0.1
341,381 + +1.4
341,382 - +0.4
341,420 + +0.3
341,456 + -0.3
341,484 - +0.5
341,484 - -0.7
341,495 + +1.3
341,495 + +0.5
341,569 - -0.8
341,809 + GFF333 0.35 -0.1
341,809 + GFF333 0.35 +0.1
341,809 + GFF333 0.35 -0.5
341,809 + GFF333 0.35 +0.5
341,810 - GFF333 0.35 -0.5
341,810 - GFF333 0.35 +0.4
341,810 - GFF333 0.35 -0.2
341,810 - GFF333 0.35 -0.4
341,894 + GFF333 0.54 -0.4
342,127 + -0.2
342,128 - +1.1
342,128 - +0.3
342,128 - -0.1
342,128 - +0.1
342,267 + GFF334 0.11 +0.3
342,267 + GFF334 0.11 -0.0
342,268 - GFF334 0.11 +0.5
342,287 - GFF334 0.12 -0.0
342,287 - GFF334 0.12 -0.9
342,287 - GFF334 0.12 -0.3
342,322 + GFF334 0.15 +0.1
342,322 + GFF334 0.15 +1.0
342,322 + GFF334 0.15 -0.5
342,323 - GFF334 0.15 +0.2
342,323 - GFF334 0.15 +0.3
342,334 + GFF334 0.16 -0.2
342,364 + GFF334 0.18 -0.4
342,365 - GFF334 0.18 +0.3
342,365 - GFF334 0.18 +0.4
342,365 - GFF334 0.18 +0.4
342,426 + GFF334 0.22 -0.5
342,427 - GFF334 0.22 -0.2
342,427 - GFF334 0.22 -0.7
342,430 + GFF334 0.22 +0.3
342,430 + GFF334 0.22 +0.1
342,430 + GFF334 0.22 -0.1
342,430 + GFF334 0.22 -0.1
342,430 + GFF334 0.22 -0.8
342,430 + GFF334 0.22 -0.4
342,430 + GFF334 0.22 +0.6
342,430 + GFF334 0.22 +0.6
342,431 - GFF334 0.23 -0.1
342,431 - GFF334 0.23 -0.0
342,431 - GFF334 0.23 -0.1
342,431 - GFF334 0.23 -0.3
342,491 - GFF334 0.27 -2.1
342,604 + GFF334 0.35 -0.0
342,714 + GFF334 0.42 -0.3
342,759 + GFF334 0.46 +0.2
343,130 - GFF334 0.71 +0.6
343,150 + GFF334 0.73 -0.2
343,150 + GFF334 0.73 +2.0
343,150 + GFF334 0.73 -0.0
343,150 + GFF334 0.73 +0.1
343,150 + GFF334 0.73 +0.5
343,151 - GFF334 0.73 +0.9
343,280 - GFF334 0.82 -1.2
343,283 - GFF334 0.82 -0.2
343,369 + GFF334 0.88 +0.6
343,369 + GFF334 0.88 +0.2
343,370 - GFF334 0.88 -0.3
343,370 - GFF334 0.88 -0.2
343,468 + +0.7
343,468 + +1.2
343,469 - -0.2
343,498 + +0.2
343,623 + GFF335 0.12 -0.5
343,623 + GFF335 0.12 +0.1
343,623 + GFF335 0.12 -0.9
343,650 + GFF335 0.16 +0.5
343,650 + GFF335 0.16 +0.3
343,650 + GFF335 0.16 +0.1
343,651 - GFF335 0.16 -0.0
343,651 - GFF335 0.16 -0.9
343,728 + GFF335 0.27 -0.5
343,728 + GFF335 0.27 +1.8
343,728 + GFF335 0.27 +0.1
343,728 + GFF335 0.27 +0.0
343,729 - GFF335 0.27 +0.4
343,729 - GFF335 0.27 -0.1
343,771 + GFF335 0.33 +0.6
343,804 - GFF335 0.37 +0.3
343,804 - GFF335 0.37 -0.9
343,920 + GFF335 0.54 +1.2
343,920 + GFF335 0.54 -0.0
343,920 + GFF335 0.54 +0.6
343,920 + GFF335 0.54 +0.7
343,920 + GFF335 0.54 +0.7
343,921 - GFF335 0.54 +0.1
343,921 - GFF335 0.54 -0.0
343,921 - GFF335 0.54 -0.2
343,921 - GFF335 0.54 -0.3
344,066 + GFF335 0.74 +1.3
344,067 - GFF335 0.74 +1.2
344,067 - GFF335 0.74 +1.3
344,140 - GFF335 0.85 +0.8
344,140 - GFF335 0.85 +0.3
344,375 + GFF336 0.36 +1.0

Or see this region's nucleotide sequence