Strain Fitness in Xanthobacter sp. DMC5 around GFF3332

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3331 and GFF3332 are separated by 162 nucleotidesGFF3332 and GFF3333 are separated by 12 nucleotides GFF3331 - hypothetical protein, at 170,758 to 171,759 GFF3331 GFF3332 - Acetophenone carboxylase gamma subunit, at 171,922 to 174,015 GFF3332 GFF3333 - Acetophenone carboxylase delta subunit, at 174,028 to 175,770 GFF3333 Position (kb) 171 172 173 174 175Strain fitness (log2 ratio) -1 0 1at 171.016 kb on - strand, within GFF3331at 171.017 kb on + strand, within GFF3331at 171.017 kb on + strand, within GFF3331at 171.017 kb on + strand, within GFF3331at 171.017 kb on + strand, within GFF3331at 171.017 kb on + strand, within GFF3331at 171.018 kb on - strand, within GFF3331at 171.018 kb on - strand, within GFF3331at 171.018 kb on - strand, within GFF3331at 171.105 kb on - strand, within GFF3331at 171.105 kb on - strand, within GFF3331at 171.224 kb on + strand, within GFF3331at 171.224 kb on + strand, within GFF3331at 171.224 kb on + strand, within GFF3331at 171.224 kb on + strand, within GFF3331at 171.224 kb on + strand, within GFF3331at 171.224 kb on + strand, within GFF3331at 171.225 kb on - strand, within GFF3331at 171.978 kb on + strandat 171.994 kb on - strandat 172.157 kb on + strand, within GFF3332at 172.158 kb on - strand, within GFF3332at 172.350 kb on + strand, within GFF3332at 172.351 kb on - strand, within GFF3332at 172.416 kb on + strand, within GFF3332at 172.417 kb on - strand, within GFF3332at 172.417 kb on - strand, within GFF3332at 172.417 kb on - strand, within GFF3332at 172.417 kb on - strand, within GFF3332at 172.417 kb on - strand, within GFF3332at 172.447 kb on + strand, within GFF3332at 172.447 kb on + strand, within GFF3332at 172.552 kb on + strand, within GFF3332at 172.552 kb on + strand, within GFF3332at 172.552 kb on + strand, within GFF3332at 172.553 kb on - strand, within GFF3332at 172.553 kb on - strand, within GFF3332at 172.586 kb on - strand, within GFF3332at 172.609 kb on + strand, within GFF3332at 172.609 kb on + strand, within GFF3332at 172.610 kb on - strand, within GFF3332at 172.610 kb on - strand, within GFF3332at 172.610 kb on - strand, within GFF3332at 172.876 kb on + strand, within GFF3332at 172.931 kb on - strand, within GFF3332at 172.993 kb on + strand, within GFF3332at 172.994 kb on - strand, within GFF3332at 172.994 kb on - strand, within GFF3332at 172.994 kb on - strand, within GFF3332at 172.994 kb on - strand, within GFF3332at 173.062 kb on + strand, within GFF3332at 173.116 kb on + strand, within GFF3332at 173.117 kb on - strand, within GFF3332at 173.117 kb on - strand, within GFF3332at 173.117 kb on - strand, within GFF3332at 173.117 kb on - strand, within GFF3332at 173.456 kb on - strand, within GFF3332at 173.456 kb on - strand, within GFF3332at 173.456 kb on - strand, within GFF3332at 173.456 kb on - strand, within GFF3332at 173.600 kb on + strand, within GFF3332at 173.689 kb on + strand, within GFF3332at 173.701 kb on + strand, within GFF3332at 173.701 kb on + strand, within GFF3332at 173.701 kb on + strand, within GFF3332at 173.701 kb on + strand, within GFF3332at 173.702 kb on - strand, within GFF3332at 173.707 kb on + strand, within GFF3332at 173.707 kb on + strand, within GFF3332at 173.707 kb on + strand, within GFF3332at 173.708 kb on - strand, within GFF3332at 173.708 kb on - strand, within GFF3332at 173.735 kb on + strand, within GFF3332at 173.735 kb on + strand, within GFF3332at 173.735 kb on + strand, within GFF3332at 173.735 kb on + strand, within GFF3332at 173.843 kb on - strandat 173.843 kb on - strandat 173.843 kb on - strandat 173.843 kb on - strandat 173.843 kb on - strandat 173.845 kb on + strandat 173.865 kb on + strandat 173.866 kb on - strandat 173.881 kb on + strandat 174.115 kb on + strandat 174.115 kb on + strandat 174.116 kb on - strandat 174.348 kb on + strand, within GFF3333at 174.352 kb on + strand, within GFF3333at 174.395 kb on - strand, within GFF3333at 174.395 kb on - strand, within GFF3333at 174.652 kb on + strand, within GFF3333at 174.697 kb on + strand, within GFF3333at 174.697 kb on + strand, within GFF3333at 174.697 kb on + strand, within GFF3333at 174.749 kb on - strand, within GFF3333at 174.749 kb on - strand, within GFF3333at 174.764 kb on - strand, within GFF3333at 174.764 kb on - strand, within GFF3333at 174.764 kb on - strand, within GFF3333at 174.764 kb on - strand, within GFF3333at 174.917 kb on - strand, within GFF3333at 174.917 kb on - strand, within GFF3333at 174.970 kb on + strand, within GFF3333at 174.971 kb on - strand, within GFF3333

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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171,016 - GFF3331 0.26 +0.3
171,017 + GFF3331 0.26 +0.1
171,017 + GFF3331 0.26 +0.3
171,017 + GFF3331 0.26 -1.5
171,017 + GFF3331 0.26 +0.7
171,017 + GFF3331 0.26 +0.1
171,018 - GFF3331 0.26 -0.3
171,018 - GFF3331 0.26 +0.2
171,018 - GFF3331 0.26 -0.3
171,105 - GFF3331 0.35 +0.1
171,105 - GFF3331 0.35 +0.6
171,224 + GFF3331 0.47 +0.4
171,224 + GFF3331 0.47 -0.4
171,224 + GFF3331 0.47 +0.1
171,224 + GFF3331 0.47 -1.1
171,224 + GFF3331 0.47 -0.6
171,224 + GFF3331 0.47 -0.2
171,225 - GFF3331 0.47 -0.2
171,978 + +0.8
171,994 - -0.5
172,157 + GFF3332 0.11 -0.9
172,158 - GFF3332 0.11 -0.1
172,350 + GFF3332 0.20 -1.1
172,351 - GFF3332 0.20 -0.2
172,416 + GFF3332 0.24 -0.4
172,417 - GFF3332 0.24 +0.3
172,417 - GFF3332 0.24 -0.4
172,417 - GFF3332 0.24 -0.8
172,417 - GFF3332 0.24 +0.5
172,417 - GFF3332 0.24 -1.2
172,447 + GFF3332 0.25 -0.3
172,447 + GFF3332 0.25 -0.5
172,552 + GFF3332 0.30 +0.7
172,552 + GFF3332 0.30 -0.2
172,552 + GFF3332 0.30 +0.6
172,553 - GFF3332 0.30 -0.4
172,553 - GFF3332 0.30 +0.0
172,586 - GFF3332 0.32 -0.8
172,609 + GFF3332 0.33 +0.2
172,609 + GFF3332 0.33 +0.2
172,610 - GFF3332 0.33 -0.6
172,610 - GFF3332 0.33 +0.0
172,610 - GFF3332 0.33 -1.1
172,876 + GFF3332 0.46 -0.7
172,931 - GFF3332 0.48 -0.1
172,993 + GFF3332 0.51 -0.3
172,994 - GFF3332 0.51 -0.3
172,994 - GFF3332 0.51 -1.3
172,994 - GFF3332 0.51 -1.3
172,994 - GFF3332 0.51 -0.2
173,062 + GFF3332 0.54 -0.9
173,116 + GFF3332 0.57 -0.3
173,117 - GFF3332 0.57 +0.3
173,117 - GFF3332 0.57 -0.1
173,117 - GFF3332 0.57 -0.0
173,117 - GFF3332 0.57 +0.0
173,456 - GFF3332 0.73 -0.5
173,456 - GFF3332 0.73 -0.0
173,456 - GFF3332 0.73 +0.5
173,456 - GFF3332 0.73 -0.1
173,600 + GFF3332 0.80 +0.0
173,689 + GFF3332 0.84 -0.3
173,701 + GFF3332 0.85 -0.9
173,701 + GFF3332 0.85 -1.3
173,701 + GFF3332 0.85 +0.6
173,701 + GFF3332 0.85 -0.2
173,702 - GFF3332 0.85 -0.6
173,707 + GFF3332 0.85 +0.3
173,707 + GFF3332 0.85 -0.5
173,707 + GFF3332 0.85 -0.9
173,708 - GFF3332 0.85 -0.0
173,708 - GFF3332 0.85 -0.3
173,735 + GFF3332 0.87 +0.2
173,735 + GFF3332 0.87 +0.9
173,735 + GFF3332 0.87 +0.4
173,735 + GFF3332 0.87 +1.0
173,843 - -0.5
173,843 - +0.3
173,843 - -1.3
173,843 - -0.5
173,843 - +0.9
173,845 + -0.2
173,865 + +0.3
173,866 - +0.8
173,881 + +0.0
174,115 + +0.1
174,115 + -0.3
174,116 - -0.3
174,348 + GFF3333 0.18 -0.2
174,352 + GFF3333 0.19 +0.7
174,395 - GFF3333 0.21 -0.2
174,395 - GFF3333 0.21 -0.7
174,652 + GFF3333 0.36 -0.0
174,697 + GFF3333 0.38 +0.4
174,697 + GFF3333 0.38 -1.4
174,697 + GFF3333 0.38 +0.3
174,749 - GFF3333 0.41 +0.4
174,749 - GFF3333 0.41 +0.2
174,764 - GFF3333 0.42 +0.3
174,764 - GFF3333 0.42 +0.5
174,764 - GFF3333 0.42 +0.1
174,764 - GFF3333 0.42 +0.2
174,917 - GFF3333 0.51 +1.1
174,917 - GFF3333 0.51 -0.3
174,970 + GFF3333 0.54 -0.9
174,971 - GFF3333 0.54 -0.3

Or see this region's nucleotide sequence