Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3318 and GFF3319 overlap by 4 nucleotides GFF3319 and GFF3320 are separated by 48 nucleotides GFF3320 and GFF3321 are separated by 11 nucleotides
GFF3318 - D-apiose dehydrogenase, at 158,511 to 159,530
GFF3318
GFF3319 - hypothetical protein, at 159,527 to 160,222
GFF3319
GFF3320 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 160,271 to 161,056
GFF3320
GFF3321 - L-2-keto-3-deoxyarabonate dehydratase, at 161,068 to 161,997
GFF3321
Position (kb) 159
160
161 Strain fitness (log2 ratio) -2
-1
0
1 at 158.901 kb on + strand, within GFF3318 at 158.901 kb on + strand, within GFF3318 at 158.901 kb on + strand, within GFF3318 at 158.901 kb on + strand, within GFF3318 at 158.901 kb on + strand, within GFF3318 at 158.901 kb on + strand, within GFF3318 at 158.902 kb on - strand, within GFF3318 at 158.905 kb on - strand, within GFF3318 at 159.351 kb on + strand, within GFF3318 at 159.351 kb on + strand, within GFF3318 at 159.351 kb on + strand, within GFF3318 at 159.351 kb on + strand, within GFF3318 at 159.352 kb on - strand, within GFF3318 at 159.352 kb on - strand, within GFF3318 at 159.369 kb on + strand, within GFF3318 at 159.369 kb on + strand, within GFF3318 at 159.370 kb on - strand, within GFF3318 at 159.370 kb on - strand, within GFF3318 at 159.381 kb on + strand, within GFF3318 at 159.381 kb on + strand, within GFF3318 at 159.487 kb on - strand at 159.677 kb on + strand, within GFF3319 at 159.677 kb on + strand, within GFF3319 at 159.677 kb on + strand, within GFF3319 at 159.678 kb on - strand, within GFF3319 at 159.678 kb on - strand, within GFF3319 at 159.678 kb on - strand, within GFF3319 at 159.678 kb on - strand, within GFF3319 at 159.759 kb on - strand, within GFF3319 at 159.785 kb on + strand, within GFF3319 at 159.785 kb on + strand, within GFF3319 at 159.785 kb on + strand, within GFF3319 at 159.885 kb on - strand, within GFF3319 at 159.885 kb on - strand, within GFF3319 at 159.978 kb on - strand, within GFF3319 at 159.978 kb on - strand, within GFF3319 at 159.978 kb on - strand, within GFF3319 at 160.001 kb on + strand, within GFF3319 at 160.001 kb on + strand, within GFF3319 at 160.002 kb on - strand, within GFF3319 at 160.002 kb on - strand, within GFF3319 at 160.010 kb on + strand, within GFF3319 at 160.010 kb on + strand, within GFF3319 at 160.011 kb on - strand, within GFF3319 at 160.011 kb on - strand, within GFF3319 at 160.011 kb on - strand, within GFF3319 at 160.012 kb on + strand, within GFF3319 at 160.012 kb on + strand, within GFF3319 at 160.012 kb on + strand, within GFF3319 at 160.013 kb on - strand, within GFF3319 at 160.013 kb on - strand, within GFF3319 at 160.013 kb on - strand, within GFF3319 at 160.151 kb on + strand, within GFF3319 at 160.151 kb on + strand, within GFF3319 at 160.151 kb on + strand, within GFF3319 at 160.152 kb on - strand, within GFF3319 at 160.152 kb on - strand, within GFF3319 at 160.152 kb on - strand, within GFF3319 at 160.152 kb on - strand, within GFF3319 at 160.166 kb on + strand at 160.167 kb on - strand at 160.543 kb on + strand, within GFF3320 at 160.544 kb on - strand, within GFF3320 at 160.961 kb on + strand, within GFF3320 at 160.961 kb on + strand, within GFF3320 at 160.962 kb on - strand, within GFF3320 at 160.962 kb on - strand, within GFF3320 at 161.003 kb on + strand at 161.004 kb on - strand at 161.004 kb on - strand at 161.004 kb on - strand at 161.173 kb on + strand, within GFF3321 at 161.174 kb on - strand, within GFF3321
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 158,901 + GFF3318 0.38 -0.6 158,901 + GFF3318 0.38 -1.2 158,901 + GFF3318 0.38 +0.3 158,901 + GFF3318 0.38 -1.4 158,901 + GFF3318 0.38 +0.0 158,901 + GFF3318 0.38 -0.5 158,902 - GFF3318 0.38 +1.3 158,905 - GFF3318 0.39 +0.1 159,351 + GFF3318 0.82 +0.8 159,351 + GFF3318 0.82 -1.1 159,351 + GFF3318 0.82 -0.2 159,351 + GFF3318 0.82 -0.3 159,352 - GFF3318 0.82 -0.1 159,352 - GFF3318 0.82 -0.1 159,369 + GFF3318 0.84 +0.3 159,369 + GFF3318 0.84 +0.4 159,370 - GFF3318 0.84 -0.6 159,370 - GFF3318 0.84 -0.9 159,381 + GFF3318 0.85 -0.5 159,381 + GFF3318 0.85 -0.1 159,487 - +0.0 159,677 + GFF3319 0.22 -1.6 159,677 + GFF3319 0.22 -1.3 159,677 + GFF3319 0.22 -0.8 159,678 - GFF3319 0.22 -0.4 159,678 - GFF3319 0.22 -1.5 159,678 - GFF3319 0.22 -1.6 159,678 - GFF3319 0.22 -1.9 159,759 - GFF3319 0.33 -0.8 159,785 + GFF3319 0.37 -0.4 159,785 + GFF3319 0.37 -0.5 159,785 + GFF3319 0.37 -2.0 159,885 - GFF3319 0.51 -0.1 159,885 - GFF3319 0.51 +0.1 159,978 - GFF3319 0.65 -0.7 159,978 - GFF3319 0.65 -0.8 159,978 - GFF3319 0.65 -0.7 160,001 + GFF3319 0.68 -0.4 160,001 + GFF3319 0.68 -1.1 160,002 - GFF3319 0.68 -0.3 160,002 - GFF3319 0.68 -1.0 160,010 + GFF3319 0.69 -0.6 160,010 + GFF3319 0.69 +0.1 160,011 - GFF3319 0.70 -1.2 160,011 - GFF3319 0.70 -1.5 160,011 - GFF3319 0.70 -0.6 160,012 + GFF3319 0.70 -0.8 160,012 + GFF3319 0.70 +0.5 160,012 + GFF3319 0.70 -1.0 160,013 - GFF3319 0.70 +1.0 160,013 - GFF3319 0.70 +0.4 160,013 - GFF3319 0.70 +0.1 160,151 + GFF3319 0.90 -0.0 160,151 + GFF3319 0.90 -1.2 160,151 + GFF3319 0.90 -0.9 160,152 - GFF3319 0.90 +0.6 160,152 - GFF3319 0.90 +0.3 160,152 - GFF3319 0.90 +0.3 160,152 - GFF3319 0.90 -0.5 160,166 + -0.5 160,167 - +0.0 160,543 + GFF3320 0.35 +0.2 160,544 - GFF3320 0.35 -0.0 160,961 + GFF3320 0.88 -0.6 160,961 + GFF3320 0.88 -0.2 160,962 - GFF3320 0.88 -0.6 160,962 - GFF3320 0.88 -0.4 161,003 + -0.0 161,004 - -0.2 161,004 - -0.6 161,004 - -0.5 161,173 + GFF3321 0.11 +0.3 161,174 - GFF3321 0.11 +0.9
Or see this region's nucleotide sequence