Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3309 and GFF3310 are separated by 49 nucleotides GFF3310 and GFF3311 are separated by 225 nucleotides
GFF3309 - hypothetical protein, at 147,188 to 148,417
GFF3309
GFF3310 - 3-hydroxy-3-methylglutaryl-coenzyme A reductase, at 148,467 to 149,750
GFF3310
GFF3311 - HTH-type transcriptional regulator NorG, at 149,976 to 151,391
GFF3311
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 147.472 kb on - strand, within GFF3309 at 147.565 kb on - strand, within GFF3309 at 147.876 kb on + strand, within GFF3309 at 147.960 kb on + strand, within GFF3309 at 147.961 kb on - strand, within GFF3309 at 147.961 kb on - strand, within GFF3309 at 147.961 kb on - strand, within GFF3309 at 148.492 kb on - strand at 148.558 kb on + strand at 148.585 kb on + strand at 148.834 kb on + strand, within GFF3310 at 148.834 kb on + strand, within GFF3310 at 148.834 kb on + strand, within GFF3310 at 148.835 kb on - strand, within GFF3310 at 148.835 kb on - strand, within GFF3310 at 148.835 kb on - strand, within GFF3310 at 148.850 kb on + strand, within GFF3310 at 148.850 kb on + strand, within GFF3310 at 148.850 kb on + strand, within GFF3310 at 148.851 kb on - strand, within GFF3310 at 148.851 kb on - strand, within GFF3310 at 148.853 kb on - strand, within GFF3310 at 148.853 kb on - strand, within GFF3310 at 148.999 kb on + strand, within GFF3310 at 148.999 kb on + strand, within GFF3310 at 149.051 kb on + strand, within GFF3310 at 149.110 kb on + strand, within GFF3310 at 149.111 kb on - strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.226 kb on - strand, within GFF3310 at 149.441 kb on - strand, within GFF3310 at 149.528 kb on - strand, within GFF3310 at 149.996 kb on - strand at 150.121 kb on - strand, within GFF3311 at 150.153 kb on + strand, within GFF3311 at 150.154 kb on - strand, within GFF3311 at 150.154 kb on - strand, within GFF3311 at 150.154 kb on - strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.207 kb on + strand, within GFF3311 at 150.208 kb on - strand, within GFF3311 at 150.208 kb on - strand, within GFF3311 at 150.208 kb on - strand, within GFF3311 at 150.312 kb on + strand, within GFF3311 at 150.312 kb on + strand, within GFF3311 at 150.312 kb on + strand, within GFF3311 at 150.313 kb on - strand, within GFF3311 at 150.313 kb on - strand, within GFF3311 at 150.378 kb on + strand, within GFF3311 at 150.378 kb on + strand, within GFF3311 at 150.426 kb on + strand, within GFF3311 at 150.427 kb on - strand, within GFF3311 at 150.427 kb on - strand, within GFF3311 at 150.427 kb on - strand, within GFF3311 at 150.609 kb on + strand, within GFF3311
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 147,472 - GFF3309 0.23 -0.3 147,565 - GFF3309 0.31 -0.5 147,876 + GFF3309 0.56 +0.5 147,960 + GFF3309 0.63 +1.7 147,961 - GFF3309 0.63 +0.5 147,961 - GFF3309 0.63 -0.7 147,961 - GFF3309 0.63 +1.0 148,492 - +0.0 148,558 + +0.2 148,585 + -0.1 148,834 + GFF3310 0.29 -0.2 148,834 + GFF3310 0.29 -0.2 148,834 + GFF3310 0.29 -0.1 148,835 - GFF3310 0.29 -1.0 148,835 - GFF3310 0.29 +1.1 148,835 - GFF3310 0.29 +0.2 148,850 + GFF3310 0.30 +0.3 148,850 + GFF3310 0.30 -0.8 148,850 + GFF3310 0.30 -1.5 148,851 - GFF3310 0.30 +1.0 148,851 - GFF3310 0.30 -0.4 148,853 - GFF3310 0.30 +0.7 148,853 - GFF3310 0.30 -0.5 148,999 + GFF3310 0.41 -1.2 148,999 + GFF3310 0.41 +1.1 149,051 + GFF3310 0.45 -0.1 149,110 + GFF3310 0.50 -0.1 149,111 - GFF3310 0.50 -0.2 149,225 + GFF3310 0.59 -3.6 149,225 + GFF3310 0.59 +0.3 149,225 + GFF3310 0.59 +0.3 149,225 + GFF3310 0.59 +0.4 149,225 + GFF3310 0.59 +0.6 149,226 - GFF3310 0.59 -0.3 149,441 - GFF3310 0.76 +0.5 149,528 - GFF3310 0.83 +0.3 149,996 - +0.1 150,121 - GFF3311 0.10 -1.5 150,153 + GFF3311 0.12 +0.4 150,154 - GFF3311 0.13 -0.2 150,154 - GFF3311 0.13 +0.3 150,154 - GFF3311 0.13 +0.0 150,207 + GFF3311 0.16 +0.4 150,207 + GFF3311 0.16 +0.5 150,207 + GFF3311 0.16 -0.3 150,207 + GFF3311 0.16 +0.6 150,207 + GFF3311 0.16 +0.8 150,207 + GFF3311 0.16 -1.5 150,208 - GFF3311 0.16 +0.1 150,208 - GFF3311 0.16 +0.0 150,208 - GFF3311 0.16 +0.6 150,312 + GFF3311 0.24 -0.2 150,312 + GFF3311 0.24 +0.1 150,312 + GFF3311 0.24 +0.2 150,313 - GFF3311 0.24 -0.2 150,313 - GFF3311 0.24 +1.4 150,378 + GFF3311 0.28 -0.2 150,378 + GFF3311 0.28 -0.3 150,426 + GFF3311 0.32 +0.6 150,427 - GFF3311 0.32 +0.4 150,427 - GFF3311 0.32 -0.1 150,427 - GFF3311 0.32 +1.2 150,609 + GFF3311 0.45 +0.2
Or see this region's nucleotide sequence