Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3269 and GFF3270 are separated by 153 nucleotides GFF3270 and GFF3271 are separated by 17 nucleotides
GFF3269 - Threonylcarbamoyl-AMP synthase, at 101,535 to 102,557
GFF3269
GFF3270 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 102,711 to 104,501
GFF3270
GFF3271 - hypothetical protein, at 104,519 to 106,519
GFF3271
Position (kb) 102
103
104
105 Strain fitness (log2 ratio) -2
-1
0
1 at 102.609 kb on - strand at 102.654 kb on - strand at 102.697 kb on + strand at 102.745 kb on - strand at 102.745 kb on - strand at 102.948 kb on + strand, within GFF3270 at 102.948 kb on + strand, within GFF3270 at 102.949 kb on - strand, within GFF3270 at 103.267 kb on - strand, within GFF3270 at 103.267 kb on - strand, within GFF3270 at 103.267 kb on - strand, within GFF3270 at 103.291 kb on - strand, within GFF3270 at 103.299 kb on + strand, within GFF3270 at 103.299 kb on + strand, within GFF3270 at 103.300 kb on - strand, within GFF3270 at 103.959 kb on + strand, within GFF3270 at 103.960 kb on - strand, within GFF3270 at 103.960 kb on - strand, within GFF3270 at 103.960 kb on - strand, within GFF3270 at 103.960 kb on - strand, within GFF3270 at 104.016 kb on + strand, within GFF3270 at 104.017 kb on - strand, within GFF3270 at 104.017 kb on - strand, within GFF3270 at 104.017 kb on - strand, within GFF3270 at 104.044 kb on + strand, within GFF3270 at 104.044 kb on + strand, within GFF3270 at 104.045 kb on - strand, within GFF3270 at 104.045 kb on - strand, within GFF3270 at 104.045 kb on - strand, within GFF3270 at 104.045 kb on - strand, within GFF3270 at 104.283 kb on + strand, within GFF3270 at 104.521 kb on - strand at 104.521 kb on - strand at 104.661 kb on + strand at 104.662 kb on - strand at 104.979 kb on + strand, within GFF3271 at 104.980 kb on - strand, within GFF3271 at 105.205 kb on - strand, within GFF3271 at 105.299 kb on - strand, within GFF3271 at 105.348 kb on + strand, within GFF3271 at 105.349 kb on - strand, within GFF3271 at 105.349 kb on - strand, within GFF3271 at 105.477 kb on + strand, within GFF3271
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 102,609 - +0.0 102,654 - -0.6 102,697 + +0.2 102,745 - -0.0 102,745 - +0.7 102,948 + GFF3270 0.13 +0.3 102,948 + GFF3270 0.13 -2.1 102,949 - GFF3270 0.13 -0.1 103,267 - GFF3270 0.31 +0.4 103,267 - GFF3270 0.31 -1.0 103,267 - GFF3270 0.31 -0.3 103,291 - GFF3270 0.32 +0.5 103,299 + GFF3270 0.33 -0.8 103,299 + GFF3270 0.33 -1.7 103,300 - GFF3270 0.33 +0.2 103,959 + GFF3270 0.70 +0.1 103,960 - GFF3270 0.70 -1.2 103,960 - GFF3270 0.70 -0.3 103,960 - GFF3270 0.70 +0.1 103,960 - GFF3270 0.70 -0.2 104,016 + GFF3270 0.73 +0.3 104,017 - GFF3270 0.73 +0.2 104,017 - GFF3270 0.73 -0.9 104,017 - GFF3270 0.73 +0.6 104,044 + GFF3270 0.74 +0.4 104,044 + GFF3270 0.74 +0.4 104,045 - GFF3270 0.74 -0.5 104,045 - GFF3270 0.74 +0.8 104,045 - GFF3270 0.74 -1.3 104,045 - GFF3270 0.74 -0.1 104,283 + GFF3270 0.88 -0.5 104,521 - +0.5 104,521 - +0.7 104,661 + -0.4 104,662 - +0.6 104,979 + GFF3271 0.23 -0.5 104,980 - GFF3271 0.23 -0.5 105,205 - GFF3271 0.34 -0.0 105,299 - GFF3271 0.39 +0.7 105,348 + GFF3271 0.41 -0.0 105,349 - GFF3271 0.41 -0.6 105,349 - GFF3271 0.41 -1.0 105,477 + GFF3271 0.48 +0.3
Or see this region's nucleotide sequence