Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3233 and GFF3234 are separated by 229 nucleotides GFF3234 and GFF3235 are separated by 79 nucleotides GFF3235 and GFF3236 are separated by 656 nucleotides
GFF3233 - Glucose-6-phosphate isomerase, at 58,550 to 60,196
GFF3233
GFF3234 - hypothetical protein, at 60,426 to 60,680
GFF3234
GFF3235 - Oxalate:formate antiporter, at 60,760 to 62,067
GFF3235
GFF3236 - Oxalate:formate antiporter, at 62,724 to 64,019
GFF3236
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -2
-1
0
1 at 60.268 kb on - strand at 60.341 kb on + strand at 60.342 kb on - strand at 60.425 kb on + strand at 60.425 kb on + strand at 60.425 kb on + strand at 60.425 kb on + strand at 60.425 kb on + strand at 60.425 kb on + strand at 60.426 kb on - strand at 60.426 kb on - strand at 60.426 kb on - strand at 60.426 kb on - strand at 60.444 kb on - strand at 60.444 kb on - strand at 60.444 kb on - strand at 60.510 kb on + strand, within GFF3234 at 60.605 kb on + strand, within GFF3234 at 60.731 kb on + strand at 60.977 kb on + strand, within GFF3235 at 61.049 kb on + strand, within GFF3235 at 61.049 kb on + strand, within GFF3235 at 61.049 kb on + strand, within GFF3235 at 61.382 kb on + strand, within GFF3235 at 61.382 kb on + strand, within GFF3235 at 61.382 kb on + strand, within GFF3235 at 61.382 kb on + strand, within GFF3235 at 61.382 kb on + strand, within GFF3235 at 61.383 kb on - strand, within GFF3235 at 61.383 kb on - strand, within GFF3235 at 61.383 kb on - strand, within GFF3235 at 61.427 kb on + strand, within GFF3235 at 61.427 kb on + strand, within GFF3235 at 61.427 kb on + strand, within GFF3235 at 61.427 kb on + strand, within GFF3235 at 61.427 kb on + strand, within GFF3235 at 61.560 kb on - strand, within GFF3235 at 61.692 kb on + strand, within GFF3235 at 61.692 kb on + strand, within GFF3235 at 61.697 kb on + strand, within GFF3235 at 61.697 kb on + strand, within GFF3235 at 61.698 kb on - strand, within GFF3235 at 61.739 kb on + strand, within GFF3235 at 61.739 kb on + strand, within GFF3235 at 61.740 kb on - strand, within GFF3235 at 61.740 kb on - strand, within GFF3235 at 61.740 kb on - strand, within GFF3235 at 61.741 kb on - strand, within GFF3235 at 61.798 kb on - strand, within GFF3235 at 61.964 kb on + strand at 61.964 kb on + strand at 61.965 kb on - strand at 61.965 kb on - strand at 62.216 kb on + strand at 62.217 kb on - strand at 62.411 kb on + strand at 62.624 kb on + strand at 62.625 kb on - strand at 62.684 kb on + strand at 62.685 kb on - strand at 62.685 kb on - strand at 62.857 kb on + strand, within GFF3236 at 62.857 kb on + strand, within GFF3236 at 62.857 kb on + strand, within GFF3236 at 62.858 kb on - strand, within GFF3236 at 62.858 kb on - strand, within GFF3236 at 62.941 kb on + strand, within GFF3236 at 62.953 kb on + strand, within GFF3236 at 62.953 kb on + strand, within GFF3236 at 63.013 kb on + strand, within GFF3236 at 63.014 kb on - strand, within GFF3236
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 60,268 - -2.0 60,341 + -0.3 60,342 - +0.2 60,425 + -0.0 60,425 + -0.3 60,425 + -0.3 60,425 + -0.1 60,425 + +0.1 60,425 + +0.3 60,426 - -0.0 60,426 - -0.1 60,426 - +1.3 60,426 - -0.0 60,444 - -0.5 60,444 - -0.1 60,444 - +0.7 60,510 + GFF3234 0.33 +0.7 60,605 + GFF3234 0.70 -0.5 60,731 + +0.9 60,977 + GFF3235 0.17 -0.2 61,049 + GFF3235 0.22 +0.5 61,049 + GFF3235 0.22 -0.4 61,049 + GFF3235 0.22 +0.5 61,382 + GFF3235 0.48 +0.0 61,382 + GFF3235 0.48 -0.8 61,382 + GFF3235 0.48 +0.2 61,382 + GFF3235 0.48 +0.5 61,382 + GFF3235 0.48 -0.1 61,383 - GFF3235 0.48 +0.5 61,383 - GFF3235 0.48 +0.5 61,383 - GFF3235 0.48 -0.3 61,427 + GFF3235 0.51 +1.0 61,427 + GFF3235 0.51 -0.1 61,427 + GFF3235 0.51 -0.7 61,427 + GFF3235 0.51 -0.2 61,427 + GFF3235 0.51 +0.8 61,560 - GFF3235 0.61 -0.6 61,692 + GFF3235 0.71 -0.7 61,692 + GFF3235 0.71 -0.1 61,697 + GFF3235 0.72 -0.6 61,697 + GFF3235 0.72 +0.6 61,698 - GFF3235 0.72 -0.6 61,739 + GFF3235 0.75 -0.1 61,739 + GFF3235 0.75 -0.3 61,740 - GFF3235 0.75 -1.7 61,740 - GFF3235 0.75 -0.2 61,740 - GFF3235 0.75 +0.1 61,741 - GFF3235 0.75 +0.8 61,798 - GFF3235 0.79 -0.1 61,964 + -0.3 61,964 + -0.1 61,965 - -0.1 61,965 - +0.1 62,216 + -0.2 62,217 - +0.9 62,411 + -0.5 62,624 + -0.3 62,625 - -0.7 62,684 + +0.0 62,685 - -0.7 62,685 - +0.3 62,857 + GFF3236 0.10 +0.3 62,857 + GFF3236 0.10 -0.3 62,857 + GFF3236 0.10 +0.1 62,858 - GFF3236 0.10 -0.2 62,858 - GFF3236 0.10 +1.1 62,941 + GFF3236 0.17 -0.5 62,953 + GFF3236 0.18 +0.8 62,953 + GFF3236 0.18 -0.1 63,013 + GFF3236 0.22 -0.4 63,014 - GFF3236 0.22 -0.5
Or see this region's nucleotide sequence