Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3215 and GFF3216 are separated by 175 nucleotides GFF3216 and GFF3217 are separated by 27 nucleotides
GFF3215 - Riboflavin transporter RibZ, at 40,018 to 41,529
GFF3215
GFF3216 - hypothetical protein, at 41,705 to 43,099
GFF3216
GFF3217 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 43,127 to 44,131
GFF3217
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -1
0
1 at 40.965 kb on + strand, within GFF3215 at 40.965 kb on + strand, within GFF3215 at 40.966 kb on - strand, within GFF3215 at 40.966 kb on - strand, within GFF3215 at 40.966 kb on - strand, within GFF3215 at 41.528 kb on - strand at 41.591 kb on - strand at 41.769 kb on + strand at 41.769 kb on + strand at 41.770 kb on - strand at 41.770 kb on - strand at 41.770 kb on - strand at 41.770 kb on - strand at 41.925 kb on + strand, within GFF3216 at 41.925 kb on + strand, within GFF3216 at 42.317 kb on + strand, within GFF3216 at 42.318 kb on - strand, within GFF3216 at 42.740 kb on - strand, within GFF3216 at 42.768 kb on - strand, within GFF3216 at 42.768 kb on - strand, within GFF3216 at 42.947 kb on + strand, within GFF3216 at 43.136 kb on + strand at 43.137 kb on - strand at 43.137 kb on - strand at 43.137 kb on - strand at 43.184 kb on + strand at 43.184 kb on + strand at 43.184 kb on + strand at 43.184 kb on + strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.185 kb on - strand at 43.352 kb on + strand, within GFF3217 at 43.353 kb on - strand, within GFF3217 at 43.353 kb on - strand, within GFF3217 at 43.377 kb on - strand, within GFF3217 at 43.856 kb on + strand, within GFF3217 at 43.856 kb on + strand, within GFF3217 at 43.857 kb on - strand, within GFF3217 at 43.857 kb on - strand, within GFF3217 at 43.964 kb on + strand, within GFF3217 at 43.965 kb on - strand, within GFF3217 at 44.069 kb on + strand at 44.084 kb on + strand at 44.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 40,965 + GFF3215 0.63 +0.4 40,965 + GFF3215 0.63 -0.3 40,966 - GFF3215 0.63 +0.9 40,966 - GFF3215 0.63 +0.5 40,966 - GFF3215 0.63 +0.1 41,528 - -0.2 41,591 - -0.5 41,769 + -0.3 41,769 + +0.0 41,770 - +0.5 41,770 - -0.6 41,770 - -0.7 41,770 - +0.3 41,925 + GFF3216 0.16 -1.6 41,925 + GFF3216 0.16 -0.2 42,317 + GFF3216 0.44 +1.1 42,318 - GFF3216 0.44 +1.1 42,740 - GFF3216 0.74 +0.9 42,768 - GFF3216 0.76 -0.3 42,768 - GFF3216 0.76 +0.1 42,947 + GFF3216 0.89 -0.8 43,136 + -0.2 43,137 - +0.4 43,137 - -0.9 43,137 - +0.5 43,184 + +0.1 43,184 + +1.0 43,184 + -0.5 43,184 + -0.5 43,185 - -0.4 43,185 - +0.1 43,185 - +0.5 43,185 - -0.1 43,185 - +0.7 43,185 - +0.7 43,185 - +0.7 43,185 - -0.8 43,185 - -0.3 43,352 + GFF3217 0.22 -0.3 43,353 - GFF3217 0.22 +1.0 43,353 - GFF3217 0.22 +0.8 43,377 - GFF3217 0.25 +0.4 43,856 + GFF3217 0.73 +0.8 43,856 + GFF3217 0.73 -0.1 43,857 - GFF3217 0.73 +0.2 43,857 - GFF3217 0.73 -0.5 43,964 + GFF3217 0.83 +0.1 43,965 - GFF3217 0.83 +0.8 44,069 + +1.1 44,084 + -0.3 44,085 - +1.2
Or see this region's nucleotide sequence