Strain Fitness in Xanthobacter sp. DMC5 around GFF3201

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3200 and GFF3201 are separated by 21 nucleotidesGFF3201 and GFF3202 are separated by 264 nucleotides GFF3200 - Acylamidase, at 24,644 to 26,050 GFF3200 GFF3201 - putative HTH-type transcriptional regulator, at 26,072 to 26,626 GFF3201 GFF3202 - hypothetical protein, at 26,891 to 27,712 GFF3202 Position (kb) 26 27Strain fitness (log2 ratio) -2 -1 0 1at 25.433 kb on + strand, within GFF3200at 25.434 kb on - strand, within GFF3200at 25.451 kb on + strand, within GFF3200at 25.586 kb on + strand, within GFF3200at 25.697 kb on + strand, within GFF3200at 25.697 kb on + strand, within GFF3200at 25.697 kb on + strand, within GFF3200at 25.697 kb on + strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.700 kb on + strand, within GFF3200at 25.701 kb on - strand, within GFF3200at 25.701 kb on - strand, within GFF3200at 25.701 kb on - strand, within GFF3200at 25.862 kb on + strand, within GFF3200at 25.862 kb on + strand, within GFF3200at 25.862 kb on + strand, within GFF3200at 25.862 kb on + strand, within GFF3200at 25.863 kb on - strand, within GFF3200at 25.863 kb on - strand, within GFF3200at 25.863 kb on - strand, within GFF3200at 25.863 kb on - strand, within GFF3200at 25.868 kb on + strand, within GFF3200at 25.868 kb on + strand, within GFF3200at 25.964 kb on + strandat 25.964 kb on + strandat 25.964 kb on + strandat 25.965 kb on - strandat 26.112 kb on + strandat 26.113 kb on - strandat 26.113 kb on - strandat 26.113 kb on - strandat 26.172 kb on + strand, within GFF3201at 26.292 kb on + strand, within GFF3201at 26.293 kb on - strand, within GFF3201at 26.293 kb on - strand, within GFF3201at 26.293 kb on - strand, within GFF3201at 26.379 kb on + strand, within GFF3201at 26.380 kb on - strand, within GFF3201at 26.514 kb on + strand, within GFF3201at 26.563 kb on + strand, within GFF3201at 26.563 kb on + strand, within GFF3201at 26.666 kb on - strandat 26.866 kb on + strandat 26.866 kb on + strandat 26.867 kb on - strandat 26.942 kb on + strandat 26.942 kb on + strandat 26.942 kb on + strandat 26.942 kb on + strandat 26.943 kb on - strandat 26.945 kb on - strandat 27.218 kb on + strand, within GFF3202at 27.218 kb on + strand, within GFF3202at 27.219 kb on - strand, within GFF3202at 27.219 kb on - strand, within GFF3202at 27.221 kb on + strand, within GFF3202at 27.221 kb on + strand, within GFF3202at 27.222 kb on - strand, within GFF3202at 27.461 kb on + strand, within GFF3202at 27.515 kb on + strand, within GFF3202at 27.515 kb on + strand, within GFF3202at 27.515 kb on + strand, within GFF3202at 27.515 kb on + strand, within GFF3202at 27.515 kb on + strand, within GFF3202at 27.516 kb on - strand, within GFF3202at 27.516 kb on - strand, within GFF3202at 27.516 kb on - strand, within GFF3202at 27.516 kb on - strand, within GFF3202

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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25,433 + GFF3200 0.56 -0.0
25,434 - GFF3200 0.56 -0.0
25,451 + GFF3200 0.57 +0.1
25,586 + GFF3200 0.67 -1.6
25,697 + GFF3200 0.75 -0.2
25,697 + GFF3200 0.75 -0.4
25,697 + GFF3200 0.75 -0.4
25,697 + GFF3200 0.75 -0.0
25,698 - GFF3200 0.75 -0.7
25,698 - GFF3200 0.75 -0.7
25,698 - GFF3200 0.75 +0.4
25,698 - GFF3200 0.75 +0.2
25,698 - GFF3200 0.75 +0.1
25,698 - GFF3200 0.75 +0.6
25,698 - GFF3200 0.75 +0.4
25,700 + GFF3200 0.75 -1.0
25,701 - GFF3200 0.75 -0.9
25,701 - GFF3200 0.75 +1.2
25,701 - GFF3200 0.75 -1.3
25,862 + GFF3200 0.87 +0.5
25,862 + GFF3200 0.87 +0.0
25,862 + GFF3200 0.87 -0.8
25,862 + GFF3200 0.87 +0.6
25,863 - GFF3200 0.87 -0.2
25,863 - GFF3200 0.87 +0.4
25,863 - GFF3200 0.87 +0.0
25,863 - GFF3200 0.87 +0.3
25,868 + GFF3200 0.87 +0.6
25,868 + GFF3200 0.87 -0.1
25,964 + -0.8
25,964 + -1.2
25,964 + +0.1
25,965 - +0.2
26,112 + -1.1
26,113 - -0.2
26,113 - -1.2
26,113 - -0.6
26,172 + GFF3201 0.18 -0.3
26,292 + GFF3201 0.40 +0.1
26,293 - GFF3201 0.40 -0.5
26,293 - GFF3201 0.40 -0.7
26,293 - GFF3201 0.40 +0.6
26,379 + GFF3201 0.55 -0.2
26,380 - GFF3201 0.55 -0.2
26,514 + GFF3201 0.80 +0.2
26,563 + GFF3201 0.88 +0.0
26,563 + GFF3201 0.88 +0.3
26,666 - -0.5
26,866 + -2.6
26,866 + +0.5
26,867 - +0.7
26,942 + -0.3
26,942 + +0.1
26,942 + +1.3
26,942 + +1.4
26,943 - -0.0
26,945 - -0.6
27,218 + GFF3202 0.40 +0.2
27,218 + GFF3202 0.40 +0.4
27,219 - GFF3202 0.40 -0.5
27,219 - GFF3202 0.40 -0.1
27,221 + GFF3202 0.40 -0.1
27,221 + GFF3202 0.40 +0.1
27,222 - GFF3202 0.40 -0.4
27,461 + GFF3202 0.69 +0.1
27,515 + GFF3202 0.76 -0.4
27,515 + GFF3202 0.76 +0.2
27,515 + GFF3202 0.76 +0.3
27,515 + GFF3202 0.76 -0.6
27,515 + GFF3202 0.76 -0.3
27,516 - GFF3202 0.76 -0.3
27,516 - GFF3202 0.76 +0.5
27,516 - GFF3202 0.76 -0.3
27,516 - GFF3202 0.76 -0.4

Or see this region's nucleotide sequence