Strain Fitness in Xanthobacter sp. DMC5 around GFF3140

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3139 and GFF3140 are separated by 145 nucleotidesGFF3140 and GFF3141 are separated by 7 nucleotides GFF3139 - hypothetical protein, at 872,536 to 873,912 GFF3139 GFF3140 - hypothetical protein, at 874,058 to 875,299 GFF3140 GFF3141 - hypothetical protein, at 875,307 to 876,224 GFF3141 Position (kb) 874 875 876Strain fitness (log2 ratio) -1 0 1at 873.925 kb on - strandat 873.925 kb on - strandat 873.947 kb on + strandat 873.974 kb on + strandat 874.784 kb on + strand, within GFF3140at 874.784 kb on + strand, within GFF3140at 875.297 kb on + strandat 876.223 kb on - strandat 876.235 kb on + strandat 876.235 kb on + strandat 876.286 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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873,925 - +0.4
873,925 - +0.4
873,947 + +0.4
873,974 + +0.6
874,784 + GFF3140 0.58 -0.9
874,784 + GFF3140 0.58 -0.5
875,297 + -0.6
876,223 - -0.4
876,235 + +0.4
876,235 + -0.0
876,286 + -1.5

Or see this region's nucleotide sequence