Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF311 and GFF312 are separated by 3 nucleotides GFF312 and GFF313 are separated by 321 nucleotides
GFF311 - hypothetical protein, at 319,791 to 321,044
GFF311
GFF312 - hypothetical protein, at 321,048 to 323,903
GFF312
GFF313 - hypothetical protein, at 324,225 to 324,842
GFF313
Position (kb) 321
322
323
324 Strain fitness (log2 ratio) -2
-1
0
1 at 320.349 kb on - strand, within GFF311 at 320.680 kb on - strand, within GFF311 at 320.911 kb on + strand, within GFF311 at 320.974 kb on + strand at 321.087 kb on + strand at 321.087 kb on + strand at 321.088 kb on - strand at 321.088 kb on - strand at 321.088 kb on - strand at 321.176 kb on + strand at 321.177 kb on - strand at 321.306 kb on + strand at 321.307 kb on - strand at 321.402 kb on - strand, within GFF312 at 321.494 kb on + strand, within GFF312 at 321.555 kb on + strand, within GFF312 at 321.555 kb on + strand, within GFF312 at 321.555 kb on + strand, within GFF312 at 321.556 kb on - strand, within GFF312 at 321.760 kb on - strand, within GFF312 at 321.760 kb on - strand, within GFF312 at 321.760 kb on - strand, within GFF312 at 321.760 kb on - strand, within GFF312 at 321.834 kb on + strand, within GFF312 at 321.835 kb on - strand, within GFF312 at 322.034 kb on + strand, within GFF312 at 322.034 kb on + strand, within GFF312 at 322.401 kb on + strand, within GFF312 at 322.730 kb on + strand, within GFF312 at 322.730 kb on + strand, within GFF312 at 322.731 kb on - strand, within GFF312 at 322.731 kb on - strand, within GFF312 at 322.731 kb on - strand, within GFF312 at 322.731 kb on - strand, within GFF312 at 322.731 kb on - strand, within GFF312 at 322.731 kb on - strand, within GFF312 at 322.890 kb on + strand, within GFF312 at 323.238 kb on + strand, within GFF312 at 323.238 kb on + strand, within GFF312 at 323.238 kb on + strand, within GFF312 at 323.239 kb on - strand, within GFF312 at 323.239 kb on - strand, within GFF312 at 323.239 kb on - strand, within GFF312 at 323.387 kb on + strand, within GFF312 at 323.387 kb on + strand, within GFF312 at 323.387 kb on + strand, within GFF312 at 323.388 kb on - strand, within GFF312 at 323.388 kb on - strand, within GFF312 at 323.426 kb on + strand, within GFF312 at 323.426 kb on + strand, within GFF312 at 323.427 kb on - strand, within GFF312 at 323.571 kb on + strand, within GFF312 at 323.572 kb on - strand, within GFF312 at 323.572 kb on - strand, within GFF312 at 323.572 kb on - strand, within GFF312 at 323.572 kb on - strand, within GFF312 at 323.572 kb on - strand, within GFF312 at 323.572 kb on - strand, within GFF312 at 323.626 kb on - strand at 323.833 kb on - strand at 323.833 kb on - strand at 323.833 kb on - strand at 324.000 kb on + strand at 324.000 kb on + strand at 324.068 kb on - strand at 324.095 kb on + strand at 324.098 kb on - strand at 324.136 kb on + strand at 324.265 kb on - strand at 324.265 kb on - strand at 324.672 kb on + strand, within GFF313 at 324.672 kb on + strand, within GFF313 at 324.673 kb on - strand, within GFF313 at 324.673 kb on - strand, within GFF313 at 324.673 kb on - strand, within GFF313 at 324.673 kb on - strand, within GFF313 at 324.734 kb on + strand, within GFF313 at 324.793 kb on - strand at 324.835 kb on + strand at 324.835 kb on + strand at 324.836 kb on - strand at 324.845 kb on - strand at 324.888 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 320,349 - GFF311 0.44 +0.7 320,680 - GFF311 0.71 +0.4 320,911 + GFF311 0.89 +1.1 320,974 + +0.4 321,087 + +0.4 321,087 + +0.1 321,088 - -0.2 321,088 - +0.2 321,088 - -0.8 321,176 + +0.1 321,177 - -1.1 321,306 + +0.1 321,307 - +0.3 321,402 - GFF312 0.12 -2.3 321,494 + GFF312 0.16 -0.3 321,555 + GFF312 0.18 +0.4 321,555 + GFF312 0.18 +0.4 321,555 + GFF312 0.18 +0.2 321,556 - GFF312 0.18 -0.4 321,760 - GFF312 0.25 +0.1 321,760 - GFF312 0.25 +0.2 321,760 - GFF312 0.25 +0.1 321,760 - GFF312 0.25 -0.0 321,834 + GFF312 0.28 -0.9 321,835 - GFF312 0.28 +0.4 322,034 + GFF312 0.35 -0.9 322,034 + GFF312 0.35 +0.6 322,401 + GFF312 0.47 +0.4 322,730 + GFF312 0.59 +0.3 322,730 + GFF312 0.59 -0.2 322,731 - GFF312 0.59 -0.1 322,731 - GFF312 0.59 +0.4 322,731 - GFF312 0.59 +0.3 322,731 - GFF312 0.59 +0.1 322,731 - GFF312 0.59 -0.4 322,731 - GFF312 0.59 +0.1 322,890 + GFF312 0.64 -0.1 323,238 + GFF312 0.77 -0.7 323,238 + GFF312 0.77 -0.1 323,238 + GFF312 0.77 +0.6 323,239 - GFF312 0.77 +0.6 323,239 - GFF312 0.77 -1.3 323,239 - GFF312 0.77 +0.1 323,387 + GFF312 0.82 -1.4 323,387 + GFF312 0.82 +0.2 323,387 + GFF312 0.82 -0.5 323,388 - GFF312 0.82 -0.4 323,388 - GFF312 0.82 +0.7 323,426 + GFF312 0.83 +0.4 323,426 + GFF312 0.83 +0.4 323,427 - GFF312 0.83 -0.4 323,571 + GFF312 0.88 +0.5 323,572 - GFF312 0.88 +0.1 323,572 - GFF312 0.88 +0.1 323,572 - GFF312 0.88 -0.4 323,572 - GFF312 0.88 -0.1 323,572 - GFF312 0.88 -1.2 323,572 - GFF312 0.88 -0.1 323,626 - +0.1 323,833 - -0.3 323,833 - +0.1 323,833 - -1.1 324,000 + +0.6 324,000 + -0.2 324,068 - +0.2 324,095 + -0.1 324,098 - -0.2 324,136 + +0.9 324,265 - -1.2 324,265 - +0.1 324,672 + GFF313 0.72 +0.7 324,672 + GFF313 0.72 +0.4 324,673 - GFF313 0.72 +0.5 324,673 - GFF313 0.72 +0.1 324,673 - GFF313 0.72 -0.3 324,673 - GFF313 0.72 -0.7 324,734 + GFF313 0.82 -0.2 324,793 - +0.5 324,835 + -0.2 324,835 + +0.8 324,836 - -0.1 324,845 - +0.7 324,888 + +0.3
Or see this region's nucleotide sequence