Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3102 and GFF3103 are separated by 165 nucleotides GFF3103 and GFF3104 are separated by 20 nucleotides GFF3104 and GFF3105 are separated by 115 nucleotides GFF3105 and GFF3106 are separated by 3 nucleotides
GFF3102 - hypothetical protein, at 831,033 to 831,632
GFF3102
GFF3103 - Putative membrane protein insertion efficiency factor, at 831,798 to 832,166
GFF3103
GFF3104 - Biosynthetic peptidoglycan transglycosylase, at 832,187 to 834,460
GFF3104
GFF3105 - hypothetical protein, at 834,576 to 835,172
GFF3105
GFF3106 - hypothetical protein, at 835,176 to 835,820
GFF3106
Position (kb) 832
833
834
835 Strain fitness (log2 ratio) -1
0
1 at 831.477 kb on + strand, within GFF3102 at 831.477 kb on + strand, within GFF3102 at 831.512 kb on - strand, within GFF3102 at 831.798 kb on - strand at 831.913 kb on - strand, within GFF3103 at 832.066 kb on - strand, within GFF3103 at 832.108 kb on - strand, within GFF3103 at 832.491 kb on + strand, within GFF3104 at 832.491 kb on + strand, within GFF3104 at 832.724 kb on + strand, within GFF3104 at 832.732 kb on - strand, within GFF3104 at 833.077 kb on - strand, within GFF3104 at 833.235 kb on + strand, within GFF3104 at 833.460 kb on + strand, within GFF3104 at 833.706 kb on + strand, within GFF3104 at 833.982 kb on + strand, within GFF3104 at 833.983 kb on - strand, within GFF3104 at 834.283 kb on - strand at 834.475 kb on + strand at 834.476 kb on - strand at 834.476 kb on - strand at 834.477 kb on + strand at 834.478 kb on - strand at 834.478 kb on - strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.481 kb on - strand at 834.578 kb on - strand at 834.722 kb on + strand, within GFF3105 at 834.878 kb on - strand, within GFF3105 at 834.935 kb on - strand, within GFF3105 at 835.021 kb on + strand, within GFF3105 at 835.303 kb on + strand, within GFF3106
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 831,477 + GFF3102 0.74 +0.0 831,477 + GFF3102 0.74 -0.9 831,512 - GFF3102 0.80 +0.0 831,798 - -0.8 831,913 - GFF3103 0.31 -0.0 832,066 - GFF3103 0.73 -0.7 832,108 - GFF3103 0.84 -0.1 832,491 + GFF3104 0.13 +0.1 832,491 + GFF3104 0.13 -0.9 832,724 + GFF3104 0.24 -1.5 832,732 - GFF3104 0.24 +0.1 833,077 - GFF3104 0.39 +0.4 833,235 + GFF3104 0.46 -0.5 833,460 + GFF3104 0.56 +0.8 833,706 + GFF3104 0.67 -1.2 833,982 + GFF3104 0.79 -0.9 833,983 - GFF3104 0.79 +0.7 834,283 - -0.2 834,475 + -0.5 834,476 - +0.7 834,476 - -0.3 834,477 + +0.1 834,478 - +0.3 834,478 - -0.7 834,479 + +0.1 834,479 + +0.9 834,479 + +0.1 834,480 - -0.1 834,480 - -1.4 834,481 - -1.5 834,578 - +0.8 834,722 + GFF3105 0.24 +0.6 834,878 - GFF3105 0.51 -1.1 834,935 - GFF3105 0.60 +0.7 835,021 + GFF3105 0.75 +0.1 835,303 + GFF3106 0.20 +0.8
Or see this region's nucleotide sequence