Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3089 and GFF3090 are separated by 173 nucleotides GFF3090 and GFF3091 are separated by 34 nucleotides GFF3091 and GFF3092 are separated by 165 nucleotides
GFF3089 - Putative amino-acid ABC transporter-binding protein YhdW, at 818,759 to 819,772
GFF3089
GFF3090 - hypothetical protein, at 819,946 to 820,977
GFF3090
GFF3091 - Divalent-cation tolerance protein CutA, at 821,012 to 821,332
GFF3091
GFF3092 - NAD kinase, at 821,498 to 822,274
GFF3092
Position (kb) 819
820
821 Strain fitness (log2 ratio) -2
-1
0
1 at 818.990 kb on + strand, within GFF3089 at 818.990 kb on + strand, within GFF3089 at 818.991 kb on - strand, within GFF3089 at 818.991 kb on - strand, within GFF3089 at 818.991 kb on - strand, within GFF3089 at 819.119 kb on + strand, within GFF3089 at 819.119 kb on + strand, within GFF3089 at 819.120 kb on - strand, within GFF3089 at 819.120 kb on - strand, within GFF3089 at 819.122 kb on + strand, within GFF3089 at 819.123 kb on - strand, within GFF3089 at 819.308 kb on + strand, within GFF3089 at 819.309 kb on - strand, within GFF3089 at 819.356 kb on + strand, within GFF3089 at 819.356 kb on + strand, within GFF3089 at 819.357 kb on - strand, within GFF3089 at 819.357 kb on - strand, within GFF3089 at 819.488 kb on + strand, within GFF3089 at 819.489 kb on - strand, within GFF3089 at 819.489 kb on - strand, within GFF3089 at 819.596 kb on + strand, within GFF3089 at 819.596 kb on + strand, within GFF3089 at 819.659 kb on + strand, within GFF3089 at 819.660 kb on - strand, within GFF3089 at 819.909 kb on + strand at 819.910 kb on - strand at 819.910 kb on - strand at 819.982 kb on - strand at 820.129 kb on + strand, within GFF3090 at 820.129 kb on + strand, within GFF3090 at 820.130 kb on - strand, within GFF3090 at 820.135 kb on + strand, within GFF3090 at 820.136 kb on - strand, within GFF3090 at 820.136 kb on - strand, within GFF3090 at 820.255 kb on + strand, within GFF3090 at 820.283 kb on - strand, within GFF3090 at 820.449 kb on + strand, within GFF3090 at 820.450 kb on - strand, within GFF3090 at 820.634 kb on - strand, within GFF3090 at 820.690 kb on - strand, within GFF3090 at 820.690 kb on - strand, within GFF3090 at 820.701 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.850 kb on - strand, within GFF3090 at 820.850 kb on - strand, within GFF3090 at 820.850 kb on - strand, within GFF3090 at 820.889 kb on - strand at 820.940 kb on - strand at 820.940 kb on - strand at 821.314 kb on - strand at 821.391 kb on - strand at 821.391 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 818,990 + GFF3089 0.23 -0.4 818,990 + GFF3089 0.23 -0.2 818,991 - GFF3089 0.23 -0.7 818,991 - GFF3089 0.23 +0.5 818,991 - GFF3089 0.23 +0.5 819,119 + GFF3089 0.36 +0.1 819,119 + GFF3089 0.36 +0.2 819,120 - GFF3089 0.36 +0.7 819,120 - GFF3089 0.36 +0.0 819,122 + GFF3089 0.36 +0.0 819,123 - GFF3089 0.36 -0.0 819,308 + GFF3089 0.54 +0.7 819,309 - GFF3089 0.54 +0.4 819,356 + GFF3089 0.59 +0.3 819,356 + GFF3089 0.59 -0.5 819,357 - GFF3089 0.59 +0.1 819,357 - GFF3089 0.59 +0.0 819,488 + GFF3089 0.72 -0.4 819,489 - GFF3089 0.72 -0.1 819,489 - GFF3089 0.72 +0.4 819,596 + GFF3089 0.83 -2.5 819,596 + GFF3089 0.83 +1.3 819,659 + GFF3089 0.89 +0.3 819,660 - GFF3089 0.89 -0.1 819,909 + -0.0 819,910 - +0.1 819,910 - +0.3 819,982 - -0.0 820,129 + GFF3090 0.18 -0.7 820,129 + GFF3090 0.18 -0.5 820,130 - GFF3090 0.18 +0.4 820,135 + GFF3090 0.18 -0.0 820,136 - GFF3090 0.18 -0.2 820,136 - GFF3090 0.18 -0.5 820,255 + GFF3090 0.30 +0.1 820,283 - GFF3090 0.33 +0.8 820,449 + GFF3090 0.49 -0.2 820,450 - GFF3090 0.49 -0.1 820,634 - GFF3090 0.67 -0.0 820,690 - GFF3090 0.72 -0.5 820,690 - GFF3090 0.72 -0.0 820,701 + GFF3090 0.73 -0.2 820,849 + GFF3090 0.88 -0.2 820,849 + GFF3090 0.88 -0.4 820,849 + GFF3090 0.88 -0.6 820,849 + GFF3090 0.88 +0.3 820,849 + GFF3090 0.88 +0.2 820,849 + GFF3090 0.88 -0.4 820,850 - GFF3090 0.88 -0.9 820,850 - GFF3090 0.88 +1.7 820,850 - GFF3090 0.88 -0.3 820,889 - +0.4 820,940 - -0.2 820,940 - -1.2 821,314 - -0.6 821,391 - +0.6 821,391 - +0.3
Or see this region's nucleotide sequence