Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3036 and GFF3037 are separated by 40 nucleotides GFF3037 and GFF3038 are separated by 115 nucleotides GFF3038 and GFF3039 are separated by 246 nucleotides GFF3039 and GFF3040 are separated by 140 nucleotides
GFF3036 - hypothetical protein, at 760,881 to 762,164
GFF3036
GFF3037 - hypothetical protein, at 762,205 to 763,002
GFF3037
GFF3038 - Glutaminase, at 763,118 to 764,962
GFF3038
GFF3039 - hypothetical protein, at 765,209 to 765,466
GFF3039
GFF3040 - L-threonate dehydrogenase, at 765,607 to 766,545
GFF3040
Position (kb) 763
764
765 Strain fitness (log2 ratio) -2
-1
0
1 at 762.143 kb on + strand at 762.233 kb on + strand at 762.599 kb on + strand, within GFF3037 at 762.600 kb on - strand, within GFF3037 at 762.600 kb on - strand, within GFF3037 at 762.611 kb on - strand, within GFF3037 at 762.797 kb on + strand, within GFF3037 at 762.797 kb on + strand, within GFF3037 at 762.851 kb on + strand, within GFF3037 at 762.851 kb on + strand, within GFF3037 at 762.851 kb on + strand, within GFF3037 at 762.852 kb on - strand, within GFF3037 at 762.994 kb on - strand at 763.059 kb on + strand at 763.059 kb on + strand at 763.059 kb on + strand at 763.060 kb on - strand at 763.060 kb on - strand at 763.060 kb on - strand at 763.092 kb on + strand at 763.093 kb on - strand at 763.119 kb on + strand at 763.283 kb on + strand at 763.283 kb on + strand at 763.284 kb on - strand at 763.404 kb on + strand, within GFF3038 at 763.405 kb on - strand, within GFF3038 at 763.457 kb on + strand, within GFF3038 at 763.614 kb on + strand, within GFF3038 at 763.614 kb on + strand, within GFF3038 at 763.614 kb on + strand, within GFF3038 at 763.615 kb on - strand, within GFF3038 at 763.848 kb on + strand, within GFF3038 at 763.849 kb on - strand, within GFF3038 at 763.975 kb on - strand, within GFF3038 at 763.975 kb on - strand, within GFF3038 at 764.184 kb on + strand, within GFF3038 at 764.184 kb on + strand, within GFF3038 at 764.185 kb on - strand, within GFF3038 at 764.208 kb on + strand, within GFF3038 at 764.208 kb on + strand, within GFF3038 at 764.208 kb on + strand, within GFF3038 at 764.208 kb on + strand, within GFF3038 at 764.209 kb on - strand, within GFF3038 at 764.253 kb on + strand, within GFF3038 at 764.253 kb on + strand, within GFF3038 at 764.254 kb on - strand, within GFF3038 at 764.364 kb on + strand, within GFF3038 at 764.365 kb on - strand, within GFF3038 at 764.406 kb on + strand, within GFF3038 at 764.406 kb on + strand, within GFF3038 at 764.406 kb on + strand, within GFF3038 at 764.406 kb on + strand, within GFF3038 at 764.407 kb on - strand, within GFF3038 at 764.407 kb on - strand, within GFF3038 at 764.421 kb on + strand, within GFF3038 at 764.775 kb on + strand, within GFF3038 at 764.775 kb on + strand, within GFF3038 at 764.776 kb on - strand, within GFF3038 at 764.776 kb on - strand, within GFF3038 at 764.776 kb on - strand, within GFF3038 at 764.845 kb on + strand at 764.845 kb on + strand at 764.847 kb on + strand at 764.847 kb on + strand at 765.107 kb on + strand at 765.117 kb on - strand at 765.481 kb on + strand at 765.482 kb on - strand at 765.565 kb on + strand at 765.566 kb on - strand at 765.566 kb on - strand at 765.650 kb on + strand at 765.651 kb on - strand at 765.821 kb on + strand, within GFF3040 at 765.822 kb on - strand, within GFF3040 at 765.896 kb on + strand, within GFF3040 at 765.896 kb on + strand, within GFF3040
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 762,143 + +0.8 762,233 + -0.5 762,599 + GFF3037 0.49 -0.2 762,600 - GFF3037 0.49 +0.6 762,600 - GFF3037 0.49 +0.0 762,611 - GFF3037 0.51 -0.2 762,797 + GFF3037 0.74 +1.7 762,797 + GFF3037 0.74 +0.5 762,851 + GFF3037 0.81 -0.5 762,851 + GFF3037 0.81 +0.3 762,851 + GFF3037 0.81 +0.5 762,852 - GFF3037 0.81 +0.4 762,994 - -0.1 763,059 + -1.1 763,059 + -1.2 763,059 + +0.4 763,060 - -2.2 763,060 - -0.5 763,060 - +0.6 763,092 + +0.1 763,093 - +0.1 763,119 + +0.1 763,283 + +0.3 763,283 + +0.1 763,284 - -0.3 763,404 + GFF3038 0.16 -0.4 763,405 - GFF3038 0.16 +0.3 763,457 + GFF3038 0.18 -0.4 763,614 + GFF3038 0.27 -0.9 763,614 + GFF3038 0.27 -0.6 763,614 + GFF3038 0.27 -0.0 763,615 - GFF3038 0.27 -0.3 763,848 + GFF3038 0.40 -0.9 763,849 - GFF3038 0.40 +1.3 763,975 - GFF3038 0.46 +0.3 763,975 - GFF3038 0.46 -1.6 764,184 + GFF3038 0.58 +0.6 764,184 + GFF3038 0.58 +0.0 764,185 - GFF3038 0.58 +0.3 764,208 + GFF3038 0.59 -0.0 764,208 + GFF3038 0.59 -0.4 764,208 + GFF3038 0.59 +0.1 764,208 + GFF3038 0.59 +0.0 764,209 - GFF3038 0.59 -0.9 764,253 + GFF3038 0.62 -0.2 764,253 + GFF3038 0.62 -0.2 764,254 - GFF3038 0.62 -0.6 764,364 + GFF3038 0.68 +0.5 764,365 - GFF3038 0.68 -0.8 764,406 + GFF3038 0.70 +0.9 764,406 + GFF3038 0.70 -1.1 764,406 + GFF3038 0.70 -0.1 764,406 + GFF3038 0.70 -0.2 764,407 - GFF3038 0.70 +0.7 764,407 - GFF3038 0.70 -1.2 764,421 + GFF3038 0.71 -0.4 764,775 + GFF3038 0.90 -0.2 764,775 + GFF3038 0.90 +1.0 764,776 - GFF3038 0.90 +1.1 764,776 - GFF3038 0.90 +0.7 764,776 - GFF3038 0.90 +0.7 764,845 + +0.8 764,845 + +0.7 764,847 + -0.1 764,847 + -0.9 765,107 + -0.2 765,117 - +0.8 765,481 + -0.1 765,482 - -0.8 765,565 + -0.0 765,566 - -0.1 765,566 - -0.8 765,650 + -0.5 765,651 - +0.9 765,821 + GFF3040 0.23 +0.2 765,822 - GFF3040 0.23 -0.3 765,896 + GFF3040 0.31 -0.0 765,896 + GFF3040 0.31 -0.1
Or see this region's nucleotide sequence