Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3032 and GFF3033 overlap by 4 nucleotides GFF3033 and GFF3034 overlap by 4 nucleotides
GFF3032 - hypothetical protein, at 756,838 to 757,377
GFF3032
GFF3033 - hypothetical protein, at 757,374 to 758,882
GFF3033
GFF3034 - Transcriptional activator protein ExaE, at 758,879 to 759,532
GFF3034
Position (kb) 757
758
759 Strain fitness (log2 ratio) -1
0
1
2 at 756.559 kb on - strand at 756.611 kb on - strand at 757.048 kb on - strand, within GFF3032 at 757.270 kb on + strand, within GFF3032 at 757.270 kb on + strand, within GFF3032 at 757.742 kb on - strand, within GFF3033 at 758.158 kb on - strand, within GFF3033 at 758.158 kb on - strand, within GFF3033 at 758.410 kb on + strand, within GFF3033 at 758.411 kb on - strand, within GFF3033 at 758.411 kb on - strand, within GFF3033 at 758.489 kb on + strand, within GFF3033 at 758.509 kb on - strand, within GFF3033 at 758.535 kb on + strand, within GFF3033 at 758.817 kb on - strand at 758.817 kb on - strand at 758.846 kb on + strand at 758.847 kb on - strand at 759.128 kb on - strand, within GFF3034 at 759.128 kb on - strand, within GFF3034 at 759.251 kb on + strand, within GFF3034 at 759.251 kb on + strand, within GFF3034 at 759.252 kb on - strand, within GFF3034 at 759.375 kb on - strand, within GFF3034 at 759.495 kb on - strand at 759.495 kb on - strand at 759.530 kb on + strand at 759.530 kb on + strand at 759.530 kb on + strand at 759.530 kb on + strand at 759.530 kb on + strand at 759.531 kb on - strand at 759.531 kb on - strand at 759.531 kb on - strand at 759.531 kb on - strand at 759.561 kb on - strand at 759.561 kb on - strand at 759.652 kb on - strand at 759.873 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 756,559 - +0.4 756,611 - +1.1 757,048 - GFF3032 0.39 +1.1 757,270 + GFF3032 0.80 -0.7 757,270 + GFF3032 0.80 +0.1 757,742 - GFF3033 0.24 +1.0 758,158 - GFF3033 0.52 +0.9 758,158 - GFF3033 0.52 +1.1 758,410 + GFF3033 0.69 +1.9 758,411 - GFF3033 0.69 +0.5 758,411 - GFF3033 0.69 +1.2 758,489 + GFF3033 0.74 +0.6 758,509 - GFF3033 0.75 +0.8 758,535 + GFF3033 0.77 +0.5 758,817 - +1.7 758,817 - +1.6 758,846 + +0.2 758,847 - +1.5 759,128 - GFF3034 0.38 +1.3 759,128 - GFF3034 0.38 +1.2 759,251 + GFF3034 0.57 +1.9 759,251 + GFF3034 0.57 +1.7 759,252 - GFF3034 0.57 +0.3 759,375 - GFF3034 0.76 +1.0 759,495 - +1.1 759,495 - +1.4 759,530 + +0.1 759,530 + +0.9 759,530 + -1.5 759,530 + -0.0 759,530 + -0.7 759,531 - +0.6 759,531 - -0.2 759,531 - +0.5 759,531 - -0.3 759,561 - +0.1 759,561 - +0.2 759,652 - -0.1 759,873 + +0.6
Or see this region's nucleotide sequence