Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3018 and GFF3019 are separated by 64 nucleotides GFF3019 and GFF3020 are separated by 135 nucleotides GFF3020 and GFF3021 overlap by 4 nucleotides GFF3021 and GFF3022 overlap by 4 nucleotides
GFF3018 - NAD/NADP-dependent betaine aldehyde dehydrogenase, at 742,644 to 744,164
GFF3018
GFF3019 - hypothetical protein, at 744,229 to 745,023
GFF3019
GFF3020 - Virginiamycin B lyase, at 745,159 to 746,091
GFF3020
GFF3021 - hypothetical protein, at 746,088 to 746,636
GFF3021
GFF3022 - hypothetical protein, at 746,633 to 747,607
GFF3022
Position (kb) 745
746
747 Strain fitness (log2 ratio) -1
0
1
2 at 744.185 kb on + strand at 744.186 kb on - strand at 744.308 kb on + strand at 744.379 kb on + strand, within GFF3019 at 744.710 kb on + strand, within GFF3019 at 744.799 kb on - strand, within GFF3019 at 744.813 kb on - strand, within GFF3019 at 745.109 kb on + strand at 745.109 kb on + strand at 745.112 kb on + strand at 745.271 kb on + strand, within GFF3020 at 745.357 kb on - strand, within GFF3020 at 745.433 kb on + strand, within GFF3020 at 745.434 kb on - strand, within GFF3020 at 745.598 kb on - strand, within GFF3020 at 745.770 kb on - strand, within GFF3020 at 746.278 kb on + strand, within GFF3021 at 746.278 kb on + strand, within GFF3021 at 746.278 kb on + strand, within GFF3021 at 746.279 kb on - strand, within GFF3021 at 746.279 kb on - strand, within GFF3021 at 746.279 kb on - strand, within GFF3021 at 746.685 kb on - strand at 746.697 kb on + strand at 746.698 kb on - strand at 746.698 kb on - strand at 746.698 kb on - strand at 746.829 kb on + strand, within GFF3022 at 746.829 kb on + strand, within GFF3022 at 746.830 kb on - strand, within GFF3022 at 746.830 kb on - strand, within GFF3022 at 746.830 kb on - strand, within GFF3022 at 746.830 kb on - strand, within GFF3022 at 746.830 kb on - strand, within GFF3022 at 747.013 kb on - strand, within GFF3022 at 747.013 kb on - strand, within GFF3022
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 744,185 + -0.1 744,186 - +0.6 744,308 + -0.7 744,379 + GFF3019 0.19 -0.4 744,710 + GFF3019 0.61 +0.2 744,799 - GFF3019 0.72 +0.4 744,813 - GFF3019 0.73 +0.2 745,109 + -0.2 745,109 + +0.3 745,112 + -1.2 745,271 + GFF3020 0.12 -0.0 745,357 - GFF3020 0.21 +0.6 745,433 + GFF3020 0.29 -0.7 745,434 - GFF3020 0.29 +0.5 745,598 - GFF3020 0.47 +0.3 745,770 - GFF3020 0.65 -0.4 746,278 + GFF3021 0.35 +1.6 746,278 + GFF3021 0.35 +1.4 746,278 + GFF3021 0.35 +0.9 746,279 - GFF3021 0.35 +1.0 746,279 - GFF3021 0.35 +0.1 746,279 - GFF3021 0.35 +0.6 746,685 - -0.2 746,697 + +0.9 746,698 - -0.2 746,698 - -0.5 746,698 - -0.1 746,829 + GFF3022 0.20 +1.9 746,829 + GFF3022 0.20 +1.6 746,830 - GFF3022 0.20 +0.9 746,830 - GFF3022 0.20 +0.5 746,830 - GFF3022 0.20 +1.1 746,830 - GFF3022 0.20 +1.8 746,830 - GFF3022 0.20 +1.0 747,013 - GFF3022 0.39 -0.6 747,013 - GFF3022 0.39 +0.5
Or see this region's nucleotide sequence