Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2986 and GFF2987 are separated by 10 nucleotides GFF2987 and GFF2988 are separated by 504 nucleotides GFF2988 and GFF2989 are separated by 10 nucleotides
GFF2986 - Potassium-transporting ATPase potassium-binding subunit, at 711,062 to 712,771
GFF2986
GFF2987 - hypothetical protein, at 712,782 to 712,871
GFF2987
GFF2988 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 713,376 to 714,098
GFF2988
GFF2989 - Vitamin B12 import ATP-binding protein BtuD, at 714,109 to 716,100
GFF2989
Position (kb) 713
714
715 Strain fitness (log2 ratio) -1
0
1 at 712.383 kb on + strand, within GFF2986 at 712.408 kb on - strand, within GFF2986 at 712.527 kb on + strand, within GFF2986 at 712.527 kb on + strand, within GFF2986 at 712.528 kb on - strand, within GFF2986 at 712.575 kb on + strand, within GFF2986 at 712.575 kb on + strand, within GFF2986 at 712.575 kb on + strand, within GFF2986 at 712.576 kb on - strand, within GFF2986 at 712.576 kb on - strand, within GFF2986 at 712.696 kb on - strand at 712.819 kb on + strand, within GFF2987 at 712.820 kb on - strand, within GFF2987 at 712.820 kb on - strand, within GFF2987 at 712.909 kb on - strand at 712.909 kb on - strand at 712.925 kb on - strand at 712.948 kb on + strand at 713.395 kb on + strand at 713.473 kb on + strand, within GFF2988 at 713.473 kb on + strand, within GFF2988 at 713.473 kb on + strand, within GFF2988 at 713.474 kb on - strand, within GFF2988 at 714.141 kb on - strand at 714.319 kb on + strand, within GFF2989 at 714.563 kb on + strand, within GFF2989 at 714.563 kb on + strand, within GFF2989 at 714.564 kb on - strand, within GFF2989 at 714.564 kb on - strand, within GFF2989 at 714.564 kb on - strand, within GFF2989 at 714.564 kb on - strand, within GFF2989 at 714.564 kb on - strand, within GFF2989 at 714.564 kb on - strand, within GFF2989 at 714.725 kb on + strand, within GFF2989 at 714.725 kb on + strand, within GFF2989 at 714.725 kb on + strand, within GFF2989 at 714.725 kb on + strand, within GFF2989 at 714.725 kb on + strand, within GFF2989 at 714.726 kb on - strand, within GFF2989 at 714.726 kb on - strand, within GFF2989 at 714.726 kb on - strand, within GFF2989 at 714.726 kb on - strand, within GFF2989 at 714.726 kb on - strand, within GFF2989 at 714.726 kb on - strand, within GFF2989 at 715.016 kb on + strand, within GFF2989 at 715.016 kb on + strand, within GFF2989 at 715.016 kb on + strand, within GFF2989 at 715.017 kb on - strand, within GFF2989 at 715.017 kb on - strand, within GFF2989 at 715.019 kb on + strand, within GFF2989 at 715.019 kb on + strand, within GFF2989 at 715.019 kb on + strand, within GFF2989 at 715.019 kb on + strand, within GFF2989 at 715.019 kb on + strand, within GFF2989 at 715.061 kb on + strand, within GFF2989 at 715.062 kb on - strand, within GFF2989
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 712,383 + GFF2986 0.77 +0.3 712,408 - GFF2986 0.79 +0.4 712,527 + GFF2986 0.86 -0.7 712,527 + GFF2986 0.86 +0.8 712,528 - GFF2986 0.86 +0.5 712,575 + GFF2986 0.88 +0.4 712,575 + GFF2986 0.88 -0.5 712,575 + GFF2986 0.88 -0.4 712,576 - GFF2986 0.89 +0.9 712,576 - GFF2986 0.89 -0.1 712,696 - +0.1 712,819 + GFF2987 0.41 +0.1 712,820 - GFF2987 0.42 -0.3 712,820 - GFF2987 0.42 +0.6 712,909 - -0.4 712,909 - +0.3 712,925 - -0.5 712,948 + -0.0 713,395 + -0.7 713,473 + GFF2988 0.13 -0.9 713,473 + GFF2988 0.13 -0.3 713,473 + GFF2988 0.13 -0.5 713,474 - GFF2988 0.14 -0.9 714,141 - -0.5 714,319 + GFF2989 0.11 +0.8 714,563 + GFF2989 0.23 +0.2 714,563 + GFF2989 0.23 -0.2 714,564 - GFF2989 0.23 -0.9 714,564 - GFF2989 0.23 +0.4 714,564 - GFF2989 0.23 -0.5 714,564 - GFF2989 0.23 -0.7 714,564 - GFF2989 0.23 -0.0 714,564 - GFF2989 0.23 -0.4 714,725 + GFF2989 0.31 +0.2 714,725 + GFF2989 0.31 +0.4 714,725 + GFF2989 0.31 +1.1 714,725 + GFF2989 0.31 -0.8 714,725 + GFF2989 0.31 +0.3 714,726 - GFF2989 0.31 +0.1 714,726 - GFF2989 0.31 +0.1 714,726 - GFF2989 0.31 +0.2 714,726 - GFF2989 0.31 -0.1 714,726 - GFF2989 0.31 +0.3 714,726 - GFF2989 0.31 +1.4 715,016 + GFF2989 0.46 -1.7 715,016 + GFF2989 0.46 +0.1 715,016 + GFF2989 0.46 -0.9 715,017 - GFF2989 0.46 +0.9 715,017 - GFF2989 0.46 +0.9 715,019 + GFF2989 0.46 -0.6 715,019 + GFF2989 0.46 -0.1 715,019 + GFF2989 0.46 -0.5 715,019 + GFF2989 0.46 +0.3 715,019 + GFF2989 0.46 +0.2 715,061 + GFF2989 0.48 -0.1 715,062 - GFF2989 0.48 -0.1
Or see this region's nucleotide sequence