Strain Fitness in Xanthobacter sp. DMC5 around GFF298

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF296 and GFF297 overlap by 4 nucleotidesGFF297 and GFF298 overlap by 14 nucleotidesGFF298 and GFF299 are separated by 9 nucleotidesGFF299 and GFF300 are separated by 3 nucleotides GFF296 - hypothetical protein, at 311,659 to 312,783 GFF296 GFF297 - hypothetical protein, at 312,780 to 313,031 GFF297 GFF298 - hypothetical protein, at 313,018 to 313,233 GFF298 GFF299 - Single-stranded DNA-binding protein, at 313,243 to 313,668 GFF299 GFF300 - ATP-dependent zinc metalloprotease FtsH, at 313,672 to 314,595 GFF300 Position (kb) 313 314Strain fitness (log2 ratio) -2 -1 0 1 2at 312.097 kb on + strand, within GFF296at 312.105 kb on + strand, within GFF296at 312.107 kb on + strand, within GFF296at 312.107 kb on + strand, within GFF296at 312.107 kb on + strand, within GFF296at 312.107 kb on + strand, within GFF296at 312.107 kb on + strand, within GFF296at 312.164 kb on + strand, within GFF296at 312.164 kb on + strand, within GFF296at 312.164 kb on + strand, within GFF296at 312.164 kb on + strand, within GFF296at 312.165 kb on - strand, within GFF296at 312.165 kb on - strand, within GFF296at 312.165 kb on - strand, within GFF296at 312.217 kb on - strand, within GFF296at 312.398 kb on + strand, within GFF296at 312.398 kb on + strand, within GFF296at 312.398 kb on + strand, within GFF296at 312.629 kb on + strand, within GFF296at 312.629 kb on + strand, within GFF296at 312.630 kb on - strand, within GFF296at 312.630 kb on - strand, within GFF296at 312.704 kb on + strandat 312.704 kb on + strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.705 kb on - strandat 312.740 kb on + strandat 312.741 kb on - strandat 312.741 kb on - strandat 312.741 kb on - strandat 312.746 kb on + strandat 312.746 kb on + strandat 312.746 kb on + strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.747 kb on - strandat 312.784 kb on - strandat 312.936 kb on + strand, within GFF297at 312.960 kb on - strand, within GFF297at 312.961 kb on + strand, within GFF297at 312.961 kb on + strand, within GFF297at 312.961 kb on + strand, within GFF297at 313.194 kb on - strand, within GFF298at 313.194 kb on - strand, within GFF298at 313.289 kb on + strand, within GFF299at 313.379 kb on + strand, within GFF299at 313.380 kb on - strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.387 kb on + strand, within GFF299at 313.388 kb on - strand, within GFF299at 313.388 kb on - strand, within GFF299at 313.388 kb on - strand, within GFF299at 313.436 kb on + strand, within GFF299at 313.491 kb on + strand, within GFF299at 313.493 kb on + strand, within GFF299at 313.493 kb on + strand, within GFF299at 313.493 kb on + strand, within GFF299at 313.493 kb on + strand, within GFF299at 313.494 kb on - strand, within GFF299at 313.494 kb on - strand, within GFF299at 313.494 kb on - strand, within GFF299at 313.494 kb on - strand, within GFF299at 313.634 kb on + strandat 313.634 kb on + strandat 313.635 kb on - strandat 313.686 kb on + strandat 313.686 kb on + strandat 313.686 kb on + strandat 313.971 kb on - strand, within GFF300at 313.971 kb on - strand, within GFF300at 313.971 kb on - strand, within GFF300at 314.119 kb on + strand, within GFF300

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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312,097 + GFF296 0.39 -1.0
312,105 + GFF296 0.40 -0.6
312,107 + GFF296 0.40 -0.4
312,107 + GFF296 0.40 -0.1
312,107 + GFF296 0.40 -0.1
312,107 + GFF296 0.40 +0.9
312,107 + GFF296 0.40 -0.3
312,164 + GFF296 0.45 -0.2
312,164 + GFF296 0.45 -0.9
312,164 + GFF296 0.45 +0.2
312,164 + GFF296 0.45 +0.7
312,165 - GFF296 0.45 -0.3
312,165 - GFF296 0.45 +0.8
312,165 - GFF296 0.45 -0.3
312,217 - GFF296 0.50 +0.1
312,398 + GFF296 0.66 +1.4
312,398 + GFF296 0.66 -0.9
312,398 + GFF296 0.66 -0.3
312,629 + GFF296 0.86 +0.6
312,629 + GFF296 0.86 -0.4
312,630 - GFF296 0.86 -0.6
312,630 - GFF296 0.86 -0.1
312,704 + -0.3
312,704 + -0.7
312,705 - +0.9
312,705 - +0.8
312,705 - +0.0
312,705 - +0.3
312,705 - -0.4
312,705 - +0.5
312,705 - -0.0
312,740 + -0.3
312,741 - +1.5
312,741 - +0.8
312,741 - -0.3
312,746 + +0.2
312,746 + -0.0
312,746 + -0.6
312,747 - -0.1
312,747 - +1.8
312,747 - +0.5
312,747 - +1.2
312,747 - -0.9
312,747 - +0.5
312,747 - -0.4
312,747 - +1.1
312,784 - -1.3
312,936 + GFF297 0.62 -1.8
312,960 - GFF297 0.71 +0.4
312,961 + GFF297 0.72 +0.8
312,961 + GFF297 0.72 -0.2
312,961 + GFF297 0.72 -0.5
313,194 - GFF298 0.81 -0.2
313,194 - GFF298 0.81 +0.6
313,289 + GFF299 0.11 -0.3
313,379 + GFF299 0.32 -0.2
313,380 - GFF299 0.32 -0.1
313,387 + GFF299 0.34 +0.1
313,387 + GFF299 0.34 +0.4
313,387 + GFF299 0.34 +0.1
313,387 + GFF299 0.34 -0.1
313,387 + GFF299 0.34 +1.7
313,387 + GFF299 0.34 -0.6
313,387 + GFF299 0.34 +0.2
313,387 + GFF299 0.34 +0.2
313,388 - GFF299 0.34 -0.9
313,388 - GFF299 0.34 -0.3
313,388 - GFF299 0.34 -0.2
313,436 + GFF299 0.45 +0.0
313,491 + GFF299 0.58 -0.4
313,493 + GFF299 0.59 -1.1
313,493 + GFF299 0.59 -0.6
313,493 + GFF299 0.59 -0.6
313,493 + GFF299 0.59 -0.3
313,494 - GFF299 0.59 -0.4
313,494 - GFF299 0.59 -0.9
313,494 - GFF299 0.59 +0.1
313,494 - GFF299 0.59 -0.3
313,634 + +0.4
313,634 + -0.5
313,635 - +0.3
313,686 + -0.5
313,686 + -1.4
313,686 + -0.4
313,971 - GFF300 0.32 -0.6
313,971 - GFF300 0.32 -0.4
313,971 - GFF300 0.32 +0.1
314,119 + GFF300 0.48 +0.1

Or see this region's nucleotide sequence