Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2973 and GFF2974 overlap by 118 nucleotides GFF2974 and GFF2975 are separated by 536 nucleotides GFF2975 and GFF2976 are separated by 88 nucleotides
GFF2973 - Anti-sigma-F factor NrsF, at 698,875 to 699,510
GFF2973
GFF2974 - hypothetical protein, at 699,393 to 699,680
GFF2974
GFF2975 - hypothetical protein, at 700,217 to 700,651
GFF2975
GFF2976 - hypothetical protein, at 700,740 to 701,702
GFF2976
Position (kb) 700
701 Strain fitness (log2 ratio) -1
0
1
2 at 699.245 kb on - strand, within GFF2973 at 699.254 kb on - strand, within GFF2973 at 699.254 kb on - strand, within GFF2973 at 699.254 kb on - strand, within GFF2973 at 699.394 kb on + strand at 699.395 kb on - strand at 699.442 kb on + strand at 699.612 kb on + strand, within GFF2974 at 699.636 kb on - strand, within GFF2974 at 699.658 kb on - strand at 699.672 kb on - strand at 699.695 kb on + strand at 699.696 kb on - strand at 699.748 kb on - strand at 699.818 kb on - strand at 699.865 kb on - strand at 699.906 kb on + strand at 699.965 kb on - strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.010 kb on + strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.011 kb on - strand at 700.014 kb on + strand at 700.015 kb on - strand at 700.265 kb on - strand, within GFF2975 at 700.265 kb on - strand, within GFF2975 at 700.499 kb on + strand, within GFF2975 at 700.500 kb on - strand, within GFF2975 at 700.707 kb on + strand at 700.917 kb on + strand, within GFF2976 at 700.924 kb on - strand, within GFF2976 at 700.966 kb on - strand, within GFF2976 at 700.966 kb on - strand, within GFF2976 at 700.966 kb on - strand, within GFF2976 at 701.040 kb on + strand, within GFF2976 at 701.041 kb on - strand, within GFF2976 at 701.041 kb on - strand, within GFF2976 at 701.061 kb on + strand, within GFF2976 at 701.062 kb on - strand, within GFF2976 at 701.062 kb on - strand, within GFF2976 at 701.300 kb on + strand, within GFF2976 at 701.300 kb on + strand, within GFF2976 at 701.300 kb on + strand, within GFF2976 at 701.300 kb on + strand, within GFF2976 at 701.301 kb on - strand, within GFF2976
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 699,245 - GFF2973 0.58 -0.9 699,254 - GFF2973 0.60 -0.5 699,254 - GFF2973 0.60 -1.1 699,254 - GFF2973 0.60 -0.9 699,394 + -0.2 699,395 - -0.3 699,442 + -0.3 699,612 + GFF2974 0.76 -0.3 699,636 - GFF2974 0.84 +0.3 699,658 - +0.4 699,672 - -0.9 699,695 + +0.6 699,696 - -0.1 699,748 - -0.1 699,818 - +0.4 699,865 - -0.4 699,906 + -0.2 699,965 - +1.1 700,010 + -0.5 700,010 + -0.7 700,010 + +0.5 700,010 + +0.1 700,010 + -0.6 700,010 + -0.3 700,010 + +0.1 700,010 + -0.2 700,011 - +0.9 700,011 - +0.0 700,011 - +0.1 700,011 - -0.8 700,011 - -0.2 700,011 - -0.5 700,011 - +0.2 700,014 + +1.0 700,015 - +0.3 700,265 - GFF2975 0.11 +0.3 700,265 - GFF2975 0.11 +0.2 700,499 + GFF2975 0.65 +0.8 700,500 - GFF2975 0.65 +0.0 700,707 + +0.6 700,917 + GFF2976 0.18 -0.0 700,924 - GFF2976 0.19 +0.5 700,966 - GFF2976 0.23 +0.1 700,966 - GFF2976 0.23 +0.8 700,966 - GFF2976 0.23 -0.4 701,040 + GFF2976 0.31 +0.3 701,041 - GFF2976 0.31 -0.2 701,041 - GFF2976 0.31 +0.6 701,061 + GFF2976 0.33 -0.3 701,062 - GFF2976 0.33 -1.6 701,062 - GFF2976 0.33 +0.6 701,300 + GFF2976 0.58 -0.1 701,300 + GFF2976 0.58 +2.1 701,300 + GFF2976 0.58 -1.0 701,300 + GFF2976 0.58 -0.5 701,301 - GFF2976 0.58 -0.1
Or see this region's nucleotide sequence