Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2966 and GFF2967 overlap by 4 nucleotides GFF2967 and GFF2968 overlap by 4 nucleotides GFF2968 and GFF2969 are separated by 1 nucleotides
GFF2966 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 691,597 to 692,358
GFF2966
GFF2967 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 692,355 to 693,131
GFF2967
GFF2968 - hypothetical protein, at 693,128 to 694,327
GFF2968
GFF2969 - High-affinity branched-chain amino acid transport system permease protein LivH, at 694,329 to 695,249
GFF2969
Position (kb) 693
694
695 Strain fitness (log2 ratio) -1
0
1 at 692.971 kb on + strand, within GFF2967 at 692.972 kb on - strand, within GFF2967 at 693.409 kb on - strand, within GFF2968 at 693.409 kb on - strand, within GFF2968 at 693.409 kb on - strand, within GFF2968 at 693.615 kb on + strand, within GFF2968 at 693.615 kb on + strand, within GFF2968 at 693.616 kb on - strand, within GFF2968 at 693.616 kb on - strand, within GFF2968 at 693.617 kb on + strand, within GFF2968 at 693.630 kb on + strand, within GFF2968 at 693.630 kb on + strand, within GFF2968 at 693.630 kb on + strand, within GFF2968 at 693.630 kb on + strand, within GFF2968 at 693.631 kb on - strand, within GFF2968 at 693.631 kb on - strand, within GFF2968 at 693.777 kb on + strand, within GFF2968 at 693.777 kb on + strand, within GFF2968 at 693.877 kb on + strand, within GFF2968 at 693.877 kb on + strand, within GFF2968 at 693.877 kb on + strand, within GFF2968 at 693.878 kb on - strand, within GFF2968 at 693.900 kb on + strand, within GFF2968 at 693.901 kb on - strand, within GFF2968 at 693.901 kb on - strand, within GFF2968 at 693.901 kb on - strand, within GFF2968 at 693.901 kb on - strand, within GFF2968 at 694.023 kb on + strand, within GFF2968 at 694.024 kb on - strand, within GFF2968 at 694.024 kb on - strand, within GFF2968 at 694.024 kb on - strand, within GFF2968 at 694.024 kb on - strand, within GFF2968 at 694.024 kb on - strand, within GFF2968 at 694.260 kb on - strand at 694.288 kb on + strand at 694.420 kb on + strand at 694.421 kb on - strand, within GFF2969 at 694.421 kb on - strand, within GFF2969 at 694.421 kb on - strand, within GFF2969 at 694.585 kb on + strand, within GFF2969 at 694.585 kb on + strand, within GFF2969 at 694.585 kb on + strand, within GFF2969 at 694.585 kb on + strand, within GFF2969 at 695.137 kb on + strand, within GFF2969 at 695.191 kb on + strand at 695.192 kb on - strand at 695.192 kb on - strand at 695.224 kb on + strand at 695.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 692,971 + GFF2967 0.79 -0.3 692,972 - GFF2967 0.79 -1.0 693,409 - GFF2968 0.23 -0.2 693,409 - GFF2968 0.23 +0.5 693,409 - GFF2968 0.23 -0.4 693,615 + GFF2968 0.41 +0.6 693,615 + GFF2968 0.41 -0.7 693,616 - GFF2968 0.41 +0.1 693,616 - GFF2968 0.41 +0.6 693,617 + GFF2968 0.41 +0.7 693,630 + GFF2968 0.42 +0.0 693,630 + GFF2968 0.42 -0.3 693,630 + GFF2968 0.42 +0.0 693,630 + GFF2968 0.42 +0.1 693,631 - GFF2968 0.42 -0.2 693,631 - GFF2968 0.42 -0.2 693,777 + GFF2968 0.54 -0.0 693,777 + GFF2968 0.54 -0.6 693,877 + GFF2968 0.62 +0.1 693,877 + GFF2968 0.62 +0.9 693,877 + GFF2968 0.62 +0.1 693,878 - GFF2968 0.62 -0.6 693,900 + GFF2968 0.64 +0.8 693,901 - GFF2968 0.64 +0.3 693,901 - GFF2968 0.64 +0.4 693,901 - GFF2968 0.64 -0.3 693,901 - GFF2968 0.64 +1.4 694,023 + GFF2968 0.75 +0.2 694,024 - GFF2968 0.75 +0.9 694,024 - GFF2968 0.75 +0.1 694,024 - GFF2968 0.75 +0.2 694,024 - GFF2968 0.75 +0.1 694,024 - GFF2968 0.75 +0.2 694,260 - -1.3 694,288 + +0.2 694,420 + -0.8 694,421 - GFF2969 0.10 -0.2 694,421 - GFF2969 0.10 -0.4 694,421 - GFF2969 0.10 +1.3 694,585 + GFF2969 0.28 -0.4 694,585 + GFF2969 0.28 +0.2 694,585 + GFF2969 0.28 -0.4 694,585 + GFF2969 0.28 -0.4 695,137 + GFF2969 0.88 -0.8 695,191 + -0.3 695,192 - -0.2 695,192 - -0.2 695,224 + -0.8 695,225 - -0.0
Or see this region's nucleotide sequence