Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2888 and GFF2889 overlap by 8 nucleotides GFF2889 and GFF2890 overlap by 4 nucleotides GFF2890 and GFF2891 overlap by 4 nucleotides GFF2891 and GFF2892 are separated by 100 nucleotides
GFF2888 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 602,422 to 603,126
GFF2888
GFF2889 - Lipopolysaccharide export system ATP-binding protein LptB, at 603,119 to 603,943
GFF2889
GFF2890 - High-affinity branched-chain amino acid transport system permease protein LivH, at 603,940 to 604,989
GFF2890
GFF2891 - High-affinity branched-chain amino acid transport system permease protein LivH, at 604,986 to 605,858
GFF2891
GFF2892 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 605,959 to 607,119
GFF2892
Position (kb) 603
604
605 Strain fitness (log2 ratio) -1
0
1
2 at 603.095 kb on + strand at 603.096 kb on - strand at 603.171 kb on + strand at 603.172 kb on - strand at 603.172 kb on - strand at 603.172 kb on - strand at 603.172 kb on - strand at 603.172 kb on - strand at 603.237 kb on + strand, within GFF2889 at 603.237 kb on + strand, within GFF2889 at 603.238 kb on - strand, within GFF2889 at 603.453 kb on + strand, within GFF2889 at 603.853 kb on + strand, within GFF2889 at 604.149 kb on - strand, within GFF2890 at 604.227 kb on - strand, within GFF2890 at 604.265 kb on + strand, within GFF2890 at 604.265 kb on + strand, within GFF2890 at 604.265 kb on + strand, within GFF2890 at 604.266 kb on - strand, within GFF2890 at 604.266 kb on - strand, within GFF2890 at 604.266 kb on - strand, within GFF2890 at 604.266 kb on - strand, within GFF2890 at 604.266 kb on - strand, within GFF2890 at 604.274 kb on + strand, within GFF2890 at 604.274 kb on + strand, within GFF2890 at 604.436 kb on + strand, within GFF2890 at 604.436 kb on + strand, within GFF2890 at 604.437 kb on - strand, within GFF2890 at 604.437 kb on - strand, within GFF2890 at 604.466 kb on + strand, within GFF2890 at 604.467 kb on - strand, within GFF2890 at 604.469 kb on + strand, within GFF2890 at 604.470 kb on - strand, within GFF2890 at 604.522 kb on + strand, within GFF2890 at 604.523 kb on - strand, within GFF2890 at 604.631 kb on + strand, within GFF2890 at 604.670 kb on + strand, within GFF2890 at 604.796 kb on + strand, within GFF2890 at 604.797 kb on - strand, within GFF2890 at 604.919 kb on + strand at 604.919 kb on + strand at 604.919 kb on + strand at 604.920 kb on - strand at 605.089 kb on + strand, within GFF2891 at 605.089 kb on + strand, within GFF2891 at 605.089 kb on + strand, within GFF2891 at 605.090 kb on - strand, within GFF2891 at 605.090 kb on - strand, within GFF2891 at 605.090 kb on - strand, within GFF2891 at 605.090 kb on - strand, within GFF2891 at 605.227 kb on + strand, within GFF2891 at 605.227 kb on + strand, within GFF2891 at 605.228 kb on - strand, within GFF2891 at 605.228 kb on - strand, within GFF2891 at 605.293 kb on + strand, within GFF2891 at 605.294 kb on - strand, within GFF2891 at 605.294 kb on - strand, within GFF2891 at 605.392 kb on + strand, within GFF2891 at 605.392 kb on + strand, within GFF2891 at 605.392 kb on + strand, within GFF2891 at 605.392 kb on + strand, within GFF2891 at 605.393 kb on - strand, within GFF2891 at 605.443 kb on + strand, within GFF2891 at 605.443 kb on + strand, within GFF2891 at 605.444 kb on - strand, within GFF2891 at 605.444 kb on - strand, within GFF2891 at 605.444 kb on - strand, within GFF2891 at 605.444 kb on - strand, within GFF2891 at 605.707 kb on + strand, within GFF2891 at 605.707 kb on + strand, within GFF2891 at 605.707 kb on + strand, within GFF2891 at 605.707 kb on + strand, within GFF2891 at 605.707 kb on + strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.708 kb on - strand, within GFF2891 at 605.731 kb on + strand, within GFF2891 at 605.731 kb on + strand, within GFF2891 at 605.732 kb on - strand, within GFF2891 at 605.732 kb on - strand, within GFF2891 at 605.806 kb on + strand at 605.806 kb on + strand at 605.806 kb on + strand at 605.806 kb on + strand at 605.806 kb on + strand at 605.806 kb on + strand at 605.807 kb on - strand at 605.807 kb on - strand at 605.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 603,095 + -0.9 603,096 - -0.3 603,171 + -0.6 603,172 - -0.0 603,172 - +0.6 603,172 - -0.5 603,172 - +0.3 603,172 - +0.1 603,237 + GFF2889 0.14 +0.0 603,237 + GFF2889 0.14 -0.1 603,238 - GFF2889 0.14 +0.3 603,453 + GFF2889 0.40 -0.3 603,853 + GFF2889 0.89 -0.1 604,149 - GFF2890 0.20 +0.6 604,227 - GFF2890 0.27 -0.1 604,265 + GFF2890 0.31 +1.0 604,265 + GFF2890 0.31 -0.7 604,265 + GFF2890 0.31 +0.4 604,266 - GFF2890 0.31 -0.1 604,266 - GFF2890 0.31 -0.2 604,266 - GFF2890 0.31 +0.1 604,266 - GFF2890 0.31 +0.5 604,266 - GFF2890 0.31 -0.0 604,274 + GFF2890 0.32 +0.8 604,274 + GFF2890 0.32 +0.3 604,436 + GFF2890 0.47 +0.2 604,436 + GFF2890 0.47 -1.1 604,437 - GFF2890 0.47 +0.6 604,437 - GFF2890 0.47 -0.3 604,466 + GFF2890 0.50 -0.3 604,467 - GFF2890 0.50 -0.0 604,469 + GFF2890 0.50 +0.0 604,470 - GFF2890 0.50 -1.1 604,522 + GFF2890 0.55 -0.4 604,523 - GFF2890 0.56 +1.4 604,631 + GFF2890 0.66 -0.1 604,670 + GFF2890 0.70 +0.1 604,796 + GFF2890 0.82 -0.0 604,797 - GFF2890 0.82 -0.6 604,919 + +0.4 604,919 + -0.5 604,919 + -0.3 604,920 - -0.2 605,089 + GFF2891 0.12 -0.1 605,089 + GFF2891 0.12 +0.0 605,089 + GFF2891 0.12 -0.0 605,090 - GFF2891 0.12 -0.6 605,090 - GFF2891 0.12 +0.7 605,090 - GFF2891 0.12 +0.5 605,090 - GFF2891 0.12 +0.1 605,227 + GFF2891 0.28 -0.3 605,227 + GFF2891 0.28 +0.3 605,228 - GFF2891 0.28 -0.2 605,228 - GFF2891 0.28 +0.3 605,293 + GFF2891 0.35 -0.4 605,294 - GFF2891 0.35 -1.0 605,294 - GFF2891 0.35 -0.6 605,392 + GFF2891 0.47 -0.2 605,392 + GFF2891 0.47 +0.7 605,392 + GFF2891 0.47 +1.0 605,392 + GFF2891 0.47 -0.4 605,393 - GFF2891 0.47 +0.5 605,443 + GFF2891 0.52 -1.1 605,443 + GFF2891 0.52 +0.6 605,444 - GFF2891 0.52 -0.0 605,444 - GFF2891 0.52 +0.5 605,444 - GFF2891 0.52 -0.1 605,444 - GFF2891 0.52 +0.9 605,707 + GFF2891 0.83 -0.4 605,707 + GFF2891 0.83 +0.4 605,707 + GFF2891 0.83 +0.4 605,707 + GFF2891 0.83 +0.1 605,707 + GFF2891 0.83 +0.2 605,708 - GFF2891 0.83 -0.2 605,708 - GFF2891 0.83 -0.1 605,708 - GFF2891 0.83 +0.7 605,708 - GFF2891 0.83 -0.2 605,708 - GFF2891 0.83 +0.1 605,708 - GFF2891 0.83 +0.5 605,731 + GFF2891 0.85 +0.3 605,731 + GFF2891 0.85 -0.2 605,732 - GFF2891 0.85 +0.3 605,732 - GFF2891 0.85 -0.6 605,806 + -0.7 605,806 + -0.1 605,806 + +1.1 605,806 + -0.2 605,806 + +0.9 605,806 + -0.1 605,807 - +0.6 605,807 - -0.2 605,807 - +1.9
Or see this region's nucleotide sequence