Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2877 and GFF2878 are separated by 218 nucleotides GFF2878 and GFF2879 are separated by 93 nucleotides GFF2879 and GFF2880 are separated by 287 nucleotides GFF2880 and GFF2881 are separated by 236 nucleotides
GFF2877 - Oxalate:formate antiporter, at 594,243 to 595,544
GFF2877
GFF2878 - hypothetical protein, at 595,763 to 596,092
GFF2878
GFF2879 - hypothetical protein, at 596,186 to 596,860
GFF2879
GFF2880 - hypothetical protein, at 597,148 to 597,273
GFF2880
GFF2881 - Cold shock protein CspA, at 597,510 to 597,719
GFF2881
Position (kb) 596
597 Strain fitness (log2 ratio) -2
-1
0
1
2 at 595.359 kb on + strand, within GFF2877 at 595.359 kb on + strand, within GFF2877 at 595.359 kb on + strand, within GFF2877 at 595.359 kb on + strand, within GFF2877 at 595.359 kb on + strand, within GFF2877 at 595.359 kb on + strand, within GFF2877 at 595.360 kb on - strand, within GFF2877 at 595.360 kb on - strand, within GFF2877 at 595.360 kb on - strand, within GFF2877 at 595.737 kb on + strand at 595.758 kb on + strand at 595.758 kb on + strand at 595.758 kb on + strand at 595.759 kb on - strand at 595.759 kb on - strand at 595.759 kb on - strand at 595.759 kb on - strand at 595.967 kb on + strand, within GFF2878 at 596.442 kb on + strand, within GFF2879 at 596.487 kb on + strand, within GFF2879 at 596.488 kb on - strand, within GFF2879 at 596.488 kb on - strand, within GFF2879 at 596.536 kb on - strand, within GFF2879 at 596.568 kb on + strand, within GFF2879 at 596.568 kb on + strand, within GFF2879 at 596.569 kb on - strand, within GFF2879 at 596.574 kb on + strand, within GFF2879 at 596.575 kb on - strand, within GFF2879 at 596.575 kb on - strand, within GFF2879 at 596.575 kb on - strand, within GFF2879 at 596.577 kb on + strand, within GFF2879 at 596.578 kb on - strand, within GFF2879 at 596.578 kb on - strand, within GFF2879 at 596.578 kb on - strand, within GFF2879 at 596.578 kb on - strand, within GFF2879 at 596.625 kb on + strand, within GFF2879 at 596.625 kb on + strand, within GFF2879 at 596.646 kb on + strand, within GFF2879 at 596.646 kb on + strand, within GFF2879 at 596.712 kb on + strand, within GFF2879 at 596.712 kb on + strand, within GFF2879 at 596.713 kb on - strand, within GFF2879 at 596.713 kb on - strand, within GFF2879 at 596.713 kb on - strand, within GFF2879 at 597.015 kb on + strand at 597.061 kb on + strand at 597.062 kb on - strand at 597.344 kb on - strand at 597.414 kb on + strand at 597.460 kb on + strand at 597.484 kb on + strand at 597.485 kb on - strand at 597.501 kb on - strand at 597.713 kb on + strand at 597.799 kb on - strand at 597.860 kb on - strand at 597.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 595,359 + GFF2877 0.86 -0.7 595,359 + GFF2877 0.86 -0.4 595,359 + GFF2877 0.86 +0.0 595,359 + GFF2877 0.86 +0.2 595,359 + GFF2877 0.86 -0.4 595,359 + GFF2877 0.86 +0.1 595,360 - GFF2877 0.86 +0.6 595,360 - GFF2877 0.86 +0.5 595,360 - GFF2877 0.86 -0.3 595,737 + -0.5 595,758 + +0.1 595,758 + -0.1 595,758 + +0.4 595,759 - -0.6 595,759 - -0.1 595,759 - +0.0 595,759 - -0.7 595,967 + GFF2878 0.62 -0.3 596,442 + GFF2879 0.38 +0.5 596,487 + GFF2879 0.45 +0.2 596,488 - GFF2879 0.45 -0.2 596,488 - GFF2879 0.45 +0.3 596,536 - GFF2879 0.52 +2.0 596,568 + GFF2879 0.57 +0.7 596,568 + GFF2879 0.57 -0.0 596,569 - GFF2879 0.57 -0.2 596,574 + GFF2879 0.57 -0.3 596,575 - GFF2879 0.58 -0.1 596,575 - GFF2879 0.58 -0.4 596,575 - GFF2879 0.58 -0.2 596,577 + GFF2879 0.58 -0.7 596,578 - GFF2879 0.58 -0.6 596,578 - GFF2879 0.58 -1.2 596,578 - GFF2879 0.58 -1.0 596,578 - GFF2879 0.58 -0.9 596,625 + GFF2879 0.65 -0.2 596,625 + GFF2879 0.65 -1.0 596,646 + GFF2879 0.68 -0.0 596,646 + GFF2879 0.68 -0.4 596,712 + GFF2879 0.78 +0.0 596,712 + GFF2879 0.78 -0.4 596,713 - GFF2879 0.78 -0.8 596,713 - GFF2879 0.78 -0.3 596,713 - GFF2879 0.78 +1.6 597,015 + -1.9 597,061 + -1.0 597,062 - -0.3 597,344 - -0.1 597,414 + +0.1 597,460 + +1.1 597,484 + -0.1 597,485 - +0.7 597,501 - -1.2 597,713 + -0.1 597,799 - -0.5 597,860 - -0.3 597,860 - -0.4
Or see this region's nucleotide sequence