Strain Fitness in Xanthobacter sp. DMC5 around GFF2860

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2859 and GFF2860 are separated by 32 nucleotidesGFF2860 and GFF2861 overlap by 4 nucleotides GFF2859 - Benzoate 1,2-dioxygenase electron transfer component, at 574,108 to 575,130 GFF2859 GFF2860 - 2-halobenzoate 1,2-dioxygenase small subunit, at 575,163 to 575,651 GFF2860 GFF2861 - 2-halobenzoate 1,2-dioxygenase large subunit, at 575,648 to 577,006 GFF2861 Position (kb) 575 576Strain fitness (log2 ratio) -2 -1 0 1at 574.232 kb on + strand, within GFF2859at 574.232 kb on + strand, within GFF2859at 574.356 kb on + strand, within GFF2859at 574.357 kb on - strand, within GFF2859at 574.359 kb on - strand, within GFF2859at 574.530 kb on - strand, within GFF2859at 574.530 kb on - strand, within GFF2859at 574.667 kb on + strand, within GFF2859at 574.667 kb on + strand, within GFF2859at 574.667 kb on + strand, within GFF2859at 574.667 kb on + strand, within GFF2859at 574.668 kb on - strand, within GFF2859at 574.668 kb on - strand, within GFF2859at 574.701 kb on + strand, within GFF2859at 574.709 kb on + strand, within GFF2859at 574.709 kb on + strand, within GFF2859at 574.710 kb on - strand, within GFF2859at 574.710 kb on - strand, within GFF2859at 574.710 kb on - strand, within GFF2859at 574.938 kb on + strand, within GFF2859at 574.939 kb on - strand, within GFF2859at 574.939 kb on - strand, within GFF2859at 574.941 kb on - strand, within GFF2859at 574.958 kb on + strand, within GFF2859at 574.958 kb on + strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 575.118 kb on + strandat 575.118 kb on + strandat 575.118 kb on + strandat 575.118 kb on + strandat 575.118 kb on + strandat 575.119 kb on - strandat 575.119 kb on - strandat 575.173 kb on + strandat 575.174 kb on - strandat 575.299 kb on + strand, within GFF2860at 575.299 kb on + strand, within GFF2860at 575.300 kb on - strand, within GFF2860at 575.326 kb on + strand, within GFF2860at 575.470 kb on + strand, within GFF2860at 575.470 kb on + strand, within GFF2860at 575.471 kb on - strand, within GFF2860at 575.471 kb on - strand, within GFF2860at 575.471 kb on - strand, within GFF2860at 575.473 kb on + strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.542 kb on + strand, within GFF2860at 575.542 kb on + strand, within GFF2860at 575.542 kb on + strand, within GFF2860at 575.543 kb on - strand, within GFF2860at 575.560 kb on + strand, within GFF2860at 575.560 kb on + strand, within GFF2860at 575.561 kb on - strand, within GFF2860at 575.615 kb on - strandat 575.706 kb on + strandat 575.706 kb on + strandat 575.706 kb on + strandat 575.707 kb on - strandat 575.707 kb on - strandat 575.859 kb on + strand, within GFF2861at 575.860 kb on - strand, within GFF2861at 575.860 kb on - strand, within GFF2861at 575.860 kb on - strand, within GFF2861at 575.934 kb on + strand, within GFF2861at 575.935 kb on - strand, within GFF2861at 575.990 kb on + strand, within GFF2861at 576.004 kb on - strand, within GFF2861at 576.078 kb on + strand, within GFF2861at 576.078 kb on + strand, within GFF2861at 576.078 kb on + strand, within GFF2861at 576.162 kb on + strand, within GFF2861at 576.162 kb on + strand, within GFF2861at 576.162 kb on + strand, within GFF2861at 576.163 kb on - strand, within GFF2861at 576.229 kb on - strand, within GFF2861at 576.312 kb on + strand, within GFF2861at 576.313 kb on - strand, within GFF2861at 576.313 kb on - strand, within GFF2861at 576.339 kb on + strand, within GFF2861at 576.340 kb on - strand, within GFF2861at 576.340 kb on - strand, within GFF2861at 576.385 kb on - strand, within GFF2861at 576.390 kb on + strand, within GFF2861at 576.391 kb on - strand, within GFF2861at 576.391 kb on - strand, within GFF2861at 576.391 kb on - strand, within GFF2861at 576.528 kb on + strand, within GFF2861at 576.528 kb on + strand, within GFF2861at 576.591 kb on + strand, within GFF2861at 576.591 kb on + strand, within GFF2861

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
574,232 + GFF2859 0.12 +0.1
574,232 + GFF2859 0.12 +0.4
574,356 + GFF2859 0.24 -0.4
574,357 - GFF2859 0.24 -0.1
574,359 - GFF2859 0.25 -0.0
574,530 - GFF2859 0.41 +0.4
574,530 - GFF2859 0.41 +0.1
574,667 + GFF2859 0.55 +1.1
574,667 + GFF2859 0.55 -0.4
574,667 + GFF2859 0.55 -0.3
574,667 + GFF2859 0.55 -0.5
574,668 - GFF2859 0.55 +1.1
574,668 - GFF2859 0.55 +0.3
574,701 + GFF2859 0.58 -0.1
574,709 + GFF2859 0.59 -0.7
574,709 + GFF2859 0.59 -0.8
574,710 - GFF2859 0.59 +1.0
574,710 - GFF2859 0.59 -0.5
574,710 - GFF2859 0.59 -0.3
574,938 + GFF2859 0.81 +0.1
574,939 - GFF2859 0.81 -0.3
574,939 - GFF2859 0.81 +1.0
574,941 - GFF2859 0.81 -0.3
574,958 + GFF2859 0.83 +0.2
574,958 + GFF2859 0.83 -0.4
574,959 - GFF2859 0.83 -0.5
574,959 - GFF2859 0.83 -0.9
574,959 - GFF2859 0.83 -0.2
574,959 - GFF2859 0.83 +0.4
574,959 - GFF2859 0.83 -0.2
574,959 - GFF2859 0.83 -1.1
574,959 - GFF2859 0.83 -0.1
574,959 - GFF2859 0.83 +0.3
575,118 + -0.1
575,118 + +0.3
575,118 + -0.5
575,118 + -0.0
575,118 + -1.3
575,119 - -0.6
575,119 - -0.2
575,173 + +0.6
575,174 - -0.2
575,299 + GFF2860 0.28 -0.1
575,299 + GFF2860 0.28 +0.1
575,300 - GFF2860 0.28 +0.6
575,326 + GFF2860 0.33 +0.4
575,470 + GFF2860 0.63 -0.3
575,470 + GFF2860 0.63 +0.1
575,471 - GFF2860 0.63 +0.5
575,471 - GFF2860 0.63 +0.0
575,471 - GFF2860 0.63 -0.6
575,473 + GFF2860 0.63 +0.1
575,474 - GFF2860 0.64 +0.2
575,474 - GFF2860 0.64 +0.4
575,474 - GFF2860 0.64 -0.1
575,474 - GFF2860 0.64 -0.7
575,474 - GFF2860 0.64 -0.0
575,474 - GFF2860 0.64 -0.6
575,542 + GFF2860 0.78 -0.9
575,542 + GFF2860 0.78 -0.7
575,542 + GFF2860 0.78 -0.7
575,543 - GFF2860 0.78 -0.2
575,560 + GFF2860 0.81 -0.1
575,560 + GFF2860 0.81 -0.4
575,561 - GFF2860 0.81 +1.1
575,615 - +0.2
575,706 + +0.3
575,706 + +0.2
575,706 + +1.5
575,707 - +0.1
575,707 - -0.9
575,859 + GFF2861 0.16 -0.6
575,860 - GFF2861 0.16 +0.6
575,860 - GFF2861 0.16 +1.0
575,860 - GFF2861 0.16 -0.7
575,934 + GFF2861 0.21 -0.2
575,935 - GFF2861 0.21 -1.0
575,990 + GFF2861 0.25 -0.6
576,004 - GFF2861 0.26 -0.3
576,078 + GFF2861 0.32 +0.7
576,078 + GFF2861 0.32 -0.4
576,078 + GFF2861 0.32 +1.1
576,162 + GFF2861 0.38 +0.5
576,162 + GFF2861 0.38 -0.4
576,162 + GFF2861 0.38 +0.6
576,163 - GFF2861 0.38 -0.0
576,229 - GFF2861 0.43 +0.4
576,312 + GFF2861 0.49 -1.9
576,313 - GFF2861 0.49 -0.7
576,313 - GFF2861 0.49 -1.3
576,339 + GFF2861 0.51 -0.1
576,340 - GFF2861 0.51 -0.0
576,340 - GFF2861 0.51 +1.0
576,385 - GFF2861 0.54 -1.1
576,390 + GFF2861 0.55 -0.5
576,391 - GFF2861 0.55 +0.3
576,391 - GFF2861 0.55 +0.3
576,391 - GFF2861 0.55 -2.0
576,528 + GFF2861 0.65 +0.1
576,528 + GFF2861 0.65 -1.2
576,591 + GFF2861 0.69 -0.1
576,591 + GFF2861 0.69 -0.9

Or see this region's nucleotide sequence