Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2856 and GFF2857 are separated by 55 nucleotides GFF2857 and GFF2858 are separated by 106 nucleotides
GFF2856 - hypothetical protein, at 570,350 to 571,627
GFF2856
GFF2857 - Catechol 1,2-dioxygenase 1, at 571,683 to 572,612
GFF2857
GFF2858 - 4-hydroxybenzoate transporter PcaK, at 572,719 to 574,053
GFF2858
Position (kb) 571
572
573 Strain fitness (log2 ratio) -2
-1
0
1 at 570.717 kb on + strand, within GFF2856 at 570.718 kb on - strand, within GFF2856 at 570.801 kb on - strand, within GFF2856 at 570.801 kb on - strand, within GFF2856 at 570.801 kb on - strand, within GFF2856 at 571.217 kb on - strand, within GFF2856 at 571.473 kb on + strand, within GFF2856 at 571.474 kb on - strand, within GFF2856 at 571.474 kb on - strand, within GFF2856 at 571.474 kb on - strand, within GFF2856 at 571.474 kb on - strand, within GFF2856 at 571.474 kb on - strand, within GFF2856 at 572.014 kb on + strand, within GFF2857 at 572.015 kb on - strand, within GFF2857 at 572.044 kb on + strand, within GFF2857 at 572.044 kb on + strand, within GFF2857 at 572.044 kb on + strand, within GFF2857 at 572.045 kb on - strand, within GFF2857 at 572.122 kb on + strand, within GFF2857 at 572.122 kb on + strand, within GFF2857 at 572.284 kb on + strand, within GFF2857 at 572.284 kb on + strand, within GFF2857 at 572.365 kb on + strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.431 kb on + strand, within GFF2857 at 572.432 kb on - strand, within GFF2857 at 572.432 kb on - strand, within GFF2857 at 572.494 kb on + strand, within GFF2857 at 572.721 kb on - strand at 572.777 kb on - strand at 572.948 kb on + strand, within GFF2858 at 572.948 kb on + strand, within GFF2858 at 572.948 kb on + strand, within GFF2858 at 572.969 kb on + strand, within GFF2858 at 572.969 kb on + strand, within GFF2858 at 573.220 kb on + strand, within GFF2858 at 573.221 kb on - strand, within GFF2858 at 573.221 kb on - strand, within GFF2858 at 573.221 kb on - strand, within GFF2858 at 573.248 kb on + strand, within GFF2858 at 573.556 kb on + strand, within GFF2858 at 573.556 kb on + strand, within GFF2858 at 573.556 kb on + strand, within GFF2858 at 573.557 kb on - strand, within GFF2858
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 570,717 + GFF2856 0.29 +1.2 570,718 - GFF2856 0.29 +0.7 570,801 - GFF2856 0.35 -0.2 570,801 - GFF2856 0.35 -0.5 570,801 - GFF2856 0.35 +0.2 571,217 - GFF2856 0.68 -0.1 571,473 + GFF2856 0.88 -0.2 571,474 - GFF2856 0.88 -0.0 571,474 - GFF2856 0.88 +0.9 571,474 - GFF2856 0.88 -0.3 571,474 - GFF2856 0.88 +0.4 571,474 - GFF2856 0.88 -0.3 572,014 + GFF2857 0.36 +0.5 572,015 - GFF2857 0.36 -0.6 572,044 + GFF2857 0.39 -0.1 572,044 + GFF2857 0.39 -0.6 572,044 + GFF2857 0.39 -0.0 572,045 - GFF2857 0.39 -0.0 572,122 + GFF2857 0.47 -0.3 572,122 + GFF2857 0.47 -0.0 572,284 + GFF2857 0.65 -0.9 572,284 + GFF2857 0.65 +1.0 572,365 + GFF2857 0.73 -0.2 572,366 - GFF2857 0.73 +0.8 572,366 - GFF2857 0.73 -0.7 572,366 - GFF2857 0.73 -0.7 572,366 - GFF2857 0.73 -1.0 572,366 - GFF2857 0.73 +0.2 572,366 - GFF2857 0.73 -0.3 572,431 + GFF2857 0.80 -0.6 572,432 - GFF2857 0.81 +0.6 572,432 - GFF2857 0.81 -0.1 572,494 + GFF2857 0.87 +1.1 572,721 - -1.0 572,777 - -2.3 572,948 + GFF2858 0.17 -0.5 572,948 + GFF2858 0.17 +0.8 572,948 + GFF2858 0.17 +1.0 572,969 + GFF2858 0.19 -1.2 572,969 + GFF2858 0.19 -0.3 573,220 + GFF2858 0.38 +0.7 573,221 - GFF2858 0.38 -0.2 573,221 - GFF2858 0.38 -0.4 573,221 - GFF2858 0.38 -0.1 573,248 + GFF2858 0.40 -0.2 573,556 + GFF2858 0.63 -0.4 573,556 + GFF2858 0.63 -0.4 573,556 + GFF2858 0.63 +0.1 573,557 - GFF2858 0.63 -0.5
Or see this region's nucleotide sequence