Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2839 and GFF2840 are separated by 94 nucleotides GFF2840 and GFF2841 are separated by 30 nucleotides
GFF2839 - hypothetical protein, at 549,160 to 550,542
GFF2839
GFF2840 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 550,637 to 551,440
GFF2840
GFF2841 - Vitamin B12 import ATP-binding protein BtuD, at 551,471 to 553,717
GFF2841
Position (kb) 550
551
552 Strain fitness (log2 ratio) -1
0
1 at 549.644 kb on - strand, within GFF2839 at 549.644 kb on - strand, within GFF2839 at 549.668 kb on - strand, within GFF2839 at 549.698 kb on - strand, within GFF2839 at 549.698 kb on - strand, within GFF2839 at 550.025 kb on + strand, within GFF2839 at 550.025 kb on + strand, within GFF2839 at 550.117 kb on + strand, within GFF2839 at 550.117 kb on + strand, within GFF2839 at 550.118 kb on - strand, within GFF2839 at 550.118 kb on - strand, within GFF2839 at 550.124 kb on - strand, within GFF2839 at 550.171 kb on + strand, within GFF2839 at 550.171 kb on + strand, within GFF2839 at 550.171 kb on + strand, within GFF2839 at 550.172 kb on - strand, within GFF2839 at 550.172 kb on - strand, within GFF2839 at 550.172 kb on - strand, within GFF2839 at 550.172 kb on - strand, within GFF2839 at 550.174 kb on + strand, within GFF2839 at 550.174 kb on + strand, within GFF2839 at 550.174 kb on + strand, within GFF2839 at 550.174 kb on + strand, within GFF2839 at 550.175 kb on - strand, within GFF2839 at 550.685 kb on + strand at 550.686 kb on - strand at 550.686 kb on - strand at 550.686 kb on - strand at 550.686 kb on - strand at 550.686 kb on - strand at 550.686 kb on - strand at 551.021 kb on + strand, within GFF2840 at 551.270 kb on + strand, within GFF2840 at 551.279 kb on + strand, within GFF2840 at 551.279 kb on + strand, within GFF2840 at 551.279 kb on + strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.280 kb on - strand, within GFF2840 at 551.285 kb on + strand, within GFF2840 at 551.364 kb on - strand at 551.735 kb on + strand, within GFF2841 at 551.963 kb on + strand, within GFF2841 at 551.964 kb on - strand, within GFF2841 at 551.964 kb on - strand, within GFF2841 at 551.964 kb on - strand, within GFF2841 at 551.964 kb on - strand, within GFF2841
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 549,644 - GFF2839 0.35 +0.1 549,644 - GFF2839 0.35 -0.5 549,668 - GFF2839 0.37 -0.1 549,698 - GFF2839 0.39 +0.4 549,698 - GFF2839 0.39 -0.1 550,025 + GFF2839 0.63 +0.6 550,025 + GFF2839 0.63 -0.3 550,117 + GFF2839 0.69 +0.1 550,117 + GFF2839 0.69 -0.3 550,118 - GFF2839 0.69 +1.4 550,118 - GFF2839 0.69 +0.0 550,124 - GFF2839 0.70 -0.0 550,171 + GFF2839 0.73 -1.4 550,171 + GFF2839 0.73 -0.3 550,171 + GFF2839 0.73 +0.7 550,172 - GFF2839 0.73 +0.9 550,172 - GFF2839 0.73 -0.1 550,172 - GFF2839 0.73 -1.4 550,172 - GFF2839 0.73 -0.4 550,174 + GFF2839 0.73 -0.2 550,174 + GFF2839 0.73 -0.1 550,174 + GFF2839 0.73 +0.3 550,174 + GFF2839 0.73 -1.4 550,175 - GFF2839 0.73 +0.0 550,685 + +0.0 550,686 - +0.0 550,686 - +0.4 550,686 - -0.9 550,686 - -0.4 550,686 - +0.3 550,686 - +1.0 551,021 + GFF2840 0.48 +0.1 551,270 + GFF2840 0.79 +0.4 551,279 + GFF2840 0.80 -0.7 551,279 + GFF2840 0.80 +0.9 551,279 + GFF2840 0.80 +0.1 551,280 - GFF2840 0.80 -0.2 551,280 - GFF2840 0.80 -0.4 551,280 - GFF2840 0.80 +0.1 551,280 - GFF2840 0.80 +0.5 551,280 - GFF2840 0.80 -1.1 551,280 - GFF2840 0.80 -0.3 551,285 + GFF2840 0.81 -0.3 551,364 - -0.9 551,735 + GFF2841 0.12 -0.5 551,963 + GFF2841 0.22 +0.0 551,964 - GFF2841 0.22 -0.1 551,964 - GFF2841 0.22 -0.9 551,964 - GFF2841 0.22 -0.1 551,964 - GFF2841 0.22 -0.3
Or see this region's nucleotide sequence