Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2834 and GFF2835 are separated by 52 nucleotides GFF2835 and GFF2836 are separated by 15 nucleotides GFF2836 and GFF2837 overlap by 1 nucleotides
GFF2834 - Acetyl-coenzyme A synthetase, at 542,794 to 544,479
GFF2834
GFF2835 - Acetyl-CoA:oxalate CoA-transferase, at 544,532 to 545,746
GFF2835
GFF2836 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 545,762 to 546,553
GFF2836
GFF2837 - Caffeyl-CoA reductase-Etf complex subunit CarC, at 546,553 to 547,758
GFF2837
Position (kb) 544
545
546 Strain fitness (log2 ratio) -2
-1
0
1 at 543.821 kb on + strand, within GFF2834 at 543.821 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.879 kb on - strand, within GFF2834 at 543.879 kb on - strand, within GFF2834 at 543.879 kb on - strand, within GFF2834 at 543.879 kb on - strand, within GFF2834 at 543.881 kb on + strand, within GFF2834 at 544.095 kb on - strand, within GFF2834 at 544.188 kb on + strand, within GFF2834 at 544.189 kb on - strand, within GFF2834 at 544.525 kb on + strand at 544.579 kb on - strand at 544.659 kb on + strand, within GFF2835 at 544.660 kb on - strand, within GFF2835 at 544.996 kb on - strand, within GFF2835 at 544.996 kb on - strand, within GFF2835 at 545.004 kb on + strand, within GFF2835 at 545.286 kb on + strand, within GFF2835 at 545.353 kb on - strand, within GFF2835 at 545.353 kb on - strand, within GFF2835 at 545.388 kb on + strand, within GFF2835 at 545.388 kb on + strand, within GFF2835 at 545.580 kb on + strand, within GFF2835 at 545.581 kb on - strand, within GFF2835 at 545.581 kb on - strand, within GFF2835 at 545.811 kb on + strand at 545.811 kb on + strand at 545.812 kb on - strand at 546.051 kb on + strand, within GFF2836 at 546.052 kb on - strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.228 kb on + strand, within GFF2836 at 546.229 kb on - strand, within GFF2836 at 546.229 kb on - strand, within GFF2836 at 546.229 kb on - strand, within GFF2836 at 546.647 kb on + strand at 546.648 kb on - strand at 546.648 kb on - strand at 546.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 543,821 + GFF2834 0.61 -0.4 543,821 + GFF2834 0.61 +0.0 543,878 + GFF2834 0.64 -2.3 543,878 + GFF2834 0.64 -0.9 543,878 + GFF2834 0.64 -0.8 543,878 + GFF2834 0.64 +0.4 543,878 + GFF2834 0.64 -0.3 543,878 + GFF2834 0.64 -0.4 543,878 + GFF2834 0.64 +0.3 543,878 + GFF2834 0.64 +0.4 543,878 + GFF2834 0.64 +0.3 543,878 + GFF2834 0.64 -0.1 543,879 - GFF2834 0.64 +0.2 543,879 - GFF2834 0.64 +0.7 543,879 - GFF2834 0.64 +0.4 543,879 - GFF2834 0.64 +0.2 543,881 + GFF2834 0.64 -0.4 544,095 - GFF2834 0.77 -0.9 544,188 + GFF2834 0.83 +0.1 544,189 - GFF2834 0.83 +0.9 544,525 + -0.3 544,579 - -0.1 544,659 + GFF2835 0.10 -0.6 544,660 - GFF2835 0.11 -0.7 544,996 - GFF2835 0.38 -0.2 544,996 - GFF2835 0.38 -0.3 545,004 + GFF2835 0.39 -0.0 545,286 + GFF2835 0.62 -0.6 545,353 - GFF2835 0.68 -0.1 545,353 - GFF2835 0.68 -0.0 545,388 + GFF2835 0.70 +0.2 545,388 + GFF2835 0.70 +0.3 545,580 + GFF2835 0.86 +0.3 545,581 - GFF2835 0.86 -0.3 545,581 - GFF2835 0.86 +0.1 545,811 + +0.3 545,811 + +0.0 545,812 - -1.1 546,051 + GFF2836 0.36 +0.1 546,052 - GFF2836 0.37 -2.4 546,228 + GFF2836 0.59 +0.6 546,228 + GFF2836 0.59 +0.1 546,228 + GFF2836 0.59 -0.9 546,228 + GFF2836 0.59 +0.1 546,228 + GFF2836 0.59 -0.6 546,228 + GFF2836 0.59 +0.1 546,229 - GFF2836 0.59 -0.7 546,229 - GFF2836 0.59 -0.2 546,229 - GFF2836 0.59 -0.4 546,647 + +0.4 546,648 - -0.1 546,648 - -0.6 546,648 - +0.5
Or see this region's nucleotide sequence