Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2819 and GFF2820 are separated by 7 nucleotides GFF2820 and GFF2821 are separated by 130 nucleotides GFF2821 and GFF2822 are separated by 20 nucleotides
GFF2819 - Alcohol dehydrogenase, at 527,941 to 528,963
GFF2819
GFF2820 - putative enoyl-CoA hydratase echA8, at 528,971 to 529,747
GFF2820
GFF2821 - Exodeoxyribonuclease III, at 529,878 to 530,735
GFF2821
GFF2822 - Anaerobic nitric oxide reductase transcription regulator NorR, at 530,756 to 532,144
GFF2822
Position (kb) 529
530
531 Strain fitness (log2 ratio) -1
0
1 at 528.955 kb on - strand at 528.955 kb on - strand at 528.970 kb on + strand at 528.970 kb on + strand at 528.970 kb on + strand at 528.971 kb on - strand at 528.978 kb on - strand at 528.978 kb on - strand at 529.412 kb on - strand, within GFF2820 at 529.412 kb on - strand, within GFF2820 at 529.526 kb on + strand, within GFF2820 at 529.526 kb on + strand, within GFF2820 at 529.526 kb on + strand, within GFF2820 at 529.527 kb on - strand, within GFF2820 at 529.527 kb on - strand, within GFF2820 at 529.527 kb on - strand, within GFF2820 at 529.527 kb on - strand, within GFF2820 at 529.527 kb on - strand, within GFF2820 at 529.527 kb on - strand, within GFF2820 at 529.616 kb on + strand, within GFF2820 at 529.617 kb on - strand, within GFF2820 at 529.617 kb on - strand, within GFF2820 at 529.617 kb on - strand, within GFF2820 at 529.643 kb on + strand, within GFF2820 at 529.643 kb on + strand, within GFF2820 at 529.644 kb on - strand, within GFF2820 at 529.664 kb on + strand, within GFF2820 at 529.664 kb on + strand, within GFF2820 at 529.664 kb on + strand, within GFF2820 at 529.665 kb on - strand, within GFF2820 at 529.781 kb on - strand at 529.781 kb on - strand at 529.814 kb on + strand at 529.814 kb on + strand at 529.857 kb on - strand at 530.092 kb on - strand, within GFF2821 at 530.211 kb on + strand, within GFF2821 at 530.212 kb on - strand, within GFF2821 at 530.253 kb on + strand, within GFF2821 at 530.253 kb on + strand, within GFF2821 at 530.295 kb on + strand, within GFF2821 at 530.532 kb on + strand, within GFF2821 at 530.532 kb on + strand, within GFF2821 at 530.533 kb on - strand, within GFF2821 at 530.533 kb on - strand, within GFF2821 at 530.533 kb on - strand, within GFF2821 at 530.547 kb on + strand, within GFF2821 at 530.769 kb on + strand at 530.769 kb on + strand at 530.770 kb on - strand at 530.788 kb on - strand at 530.788 kb on - strand at 531.000 kb on + strand, within GFF2822 at 531.000 kb on + strand, within GFF2822 at 531.001 kb on - strand, within GFF2822 at 531.001 kb on - strand, within GFF2822 at 531.210 kb on + strand, within GFF2822 at 531.210 kb on + strand, within GFF2822 at 531.210 kb on + strand, within GFF2822 at 531.211 kb on - strand, within GFF2822 at 531.211 kb on - strand, within GFF2822
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 528,955 - +0.5 528,955 - +0.7 528,970 + -0.5 528,970 + +0.2 528,970 + +0.3 528,971 - -0.8 528,978 - -0.4 528,978 - -0.3 529,412 - GFF2820 0.57 -0.3 529,412 - GFF2820 0.57 -0.1 529,526 + GFF2820 0.71 -0.2 529,526 + GFF2820 0.71 -0.1 529,526 + GFF2820 0.71 -0.1 529,527 - GFF2820 0.72 -0.5 529,527 - GFF2820 0.72 -0.2 529,527 - GFF2820 0.72 +0.2 529,527 - GFF2820 0.72 -0.1 529,527 - GFF2820 0.72 -0.9 529,527 - GFF2820 0.72 +0.0 529,616 + GFF2820 0.83 +0.0 529,617 - GFF2820 0.83 +0.2 529,617 - GFF2820 0.83 -0.6 529,617 - GFF2820 0.83 -0.3 529,643 + GFF2820 0.86 +0.2 529,643 + GFF2820 0.86 +1.0 529,644 - GFF2820 0.87 +0.1 529,664 + GFF2820 0.89 -0.1 529,664 + GFF2820 0.89 -0.6 529,664 + GFF2820 0.89 -0.1 529,665 - GFF2820 0.89 -1.4 529,781 - -0.8 529,781 - -0.8 529,814 + -0.1 529,814 + -0.5 529,857 - +0.1 530,092 - GFF2821 0.25 -0.3 530,211 + GFF2821 0.39 +1.7 530,212 - GFF2821 0.39 -0.2 530,253 + GFF2821 0.44 +0.4 530,253 + GFF2821 0.44 +0.4 530,295 + GFF2821 0.49 +1.0 530,532 + GFF2821 0.76 +0.3 530,532 + GFF2821 0.76 -0.0 530,533 - GFF2821 0.76 +0.3 530,533 - GFF2821 0.76 -0.6 530,533 - GFF2821 0.76 -0.1 530,547 + GFF2821 0.78 -0.8 530,769 + -0.8 530,769 + -0.3 530,770 - -0.2 530,788 - -0.2 530,788 - -0.4 531,000 + GFF2822 0.18 +1.1 531,000 + GFF2822 0.18 +0.4 531,001 - GFF2822 0.18 +0.7 531,001 - GFF2822 0.18 -1.0 531,210 + GFF2822 0.33 -1.0 531,210 + GFF2822 0.33 +0.2 531,210 + GFF2822 0.33 +0.3 531,211 - GFF2822 0.33 -0.3 531,211 - GFF2822 0.33 -0.6
Or see this region's nucleotide sequence