Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2800 and GFF2801 overlap by 4 nucleotides GFF2801 and GFF2802 are separated by 22 nucleotides GFF2802 and GFF2803 are separated by 22 nucleotides
GFF2800 - Putative metabolite transport protein YjhB, at 506,035 to 507,294
GFF2800
GFF2801 - Kynurenine formamidase, at 507,291 to 508,130
GFF2801
GFF2802 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 508,153 to 508,935
GFF2802
GFF2803 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, at 508,958 to 509,719
GFF2803
Position (kb) 507
508
509 Strain fitness (log2 ratio) -1
0
1 at 506.338 kb on + strand, within GFF2800 at 506.767 kb on + strand, within GFF2800 at 506.768 kb on - strand, within GFF2800 at 506.768 kb on - strand, within GFF2800 at 506.909 kb on - strand, within GFF2800 at 506.951 kb on - strand, within GFF2800 at 506.951 kb on - strand, within GFF2800 at 506.984 kb on - strand, within GFF2800 at 507.056 kb on - strand, within GFF2800 at 507.127 kb on + strand, within GFF2800 at 507.127 kb on + strand, within GFF2800 at 507.127 kb on + strand, within GFF2800 at 507.190 kb on + strand at 507.190 kb on + strand at 507.230 kb on - strand at 507.576 kb on + strand, within GFF2801 at 507.576 kb on + strand, within GFF2801 at 507.577 kb on - strand, within GFF2801 at 507.577 kb on - strand, within GFF2801 at 507.811 kb on - strand, within GFF2801 at 507.811 kb on - strand, within GFF2801 at 507.831 kb on + strand, within GFF2801 at 507.832 kb on - strand, within GFF2801 at 507.923 kb on + strand, within GFF2801 at 508.162 kb on + strand at 508.256 kb on - strand, within GFF2802 at 508.271 kb on - strand, within GFF2802 at 508.390 kb on + strand, within GFF2802 at 508.390 kb on + strand, within GFF2802 at 508.525 kb on + strand, within GFF2802 at 508.525 kb on + strand, within GFF2802 at 508.526 kb on - strand, within GFF2802 at 508.526 kb on - strand, within GFF2802 at 508.526 kb on - strand, within GFF2802 at 508.526 kb on - strand, within GFF2802 at 509.042 kb on + strand, within GFF2803 at 509.042 kb on + strand, within GFF2803 at 509.043 kb on - strand, within GFF2803 at 509.043 kb on - strand, within GFF2803 at 509.043 kb on - strand, within GFF2803 at 509.073 kb on - strand, within GFF2803
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 506,338 + GFF2800 0.24 -0.2 506,767 + GFF2800 0.58 +0.2 506,768 - GFF2800 0.58 +0.2 506,768 - GFF2800 0.58 +0.1 506,909 - GFF2800 0.69 +0.1 506,951 - GFF2800 0.73 -1.3 506,951 - GFF2800 0.73 -0.1 506,984 - GFF2800 0.75 -0.6 507,056 - GFF2800 0.81 -0.1 507,127 + GFF2800 0.87 +0.2 507,127 + GFF2800 0.87 +0.3 507,127 + GFF2800 0.87 +0.5 507,190 + -0.6 507,190 + -0.3 507,230 - +0.1 507,576 + GFF2801 0.34 -0.8 507,576 + GFF2801 0.34 -0.0 507,577 - GFF2801 0.34 -0.3 507,577 - GFF2801 0.34 -0.8 507,811 - GFF2801 0.62 +0.1 507,811 - GFF2801 0.62 +0.7 507,831 + GFF2801 0.64 -0.3 507,832 - GFF2801 0.64 +0.2 507,923 + GFF2801 0.75 +0.5 508,162 + +0.2 508,256 - GFF2802 0.13 +0.7 508,271 - GFF2802 0.15 +0.6 508,390 + GFF2802 0.30 -0.3 508,390 + GFF2802 0.30 -1.1 508,525 + GFF2802 0.48 -0.3 508,525 + GFF2802 0.48 +0.2 508,526 - GFF2802 0.48 -0.4 508,526 - GFF2802 0.48 -0.8 508,526 - GFF2802 0.48 -0.1 508,526 - GFF2802 0.48 +0.4 509,042 + GFF2803 0.11 -0.9 509,042 + GFF2803 0.11 -1.2 509,043 - GFF2803 0.11 -0.1 509,043 - GFF2803 0.11 +0.7 509,043 - GFF2803 0.11 +1.2 509,073 - GFF2803 0.15 +1.2
Or see this region's nucleotide sequence